Detailed information NTG0702349

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PCP28_RS03395
• Genome accession: NZ_CP115293
• Coordinates: 365276..366280 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain 382
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 360276..371280

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PCP28_RS03365 (PCP28_03365)	fghA	360368..361219 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
PCP28_RS03370 (PCP28_03370)	ispF	361290..361763 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PCP28_RS03375 (PCP28_03375)	truD	361760..362827 (+)	1068	WP_023114621.1	tRNA pseudouridine(13) synthase TruD	-
PCP28_RS03380 (PCP28_03380)	surE	362815..363564 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
PCP28_RS03385 (PCP28_03385)	-	363597..364232 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PCP28_RS03390 (PCP28_03390)	-	364278..365171 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
PCP28_RS03395 (PCP28_03395)	rpoS	365276..366280 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PCP28_RS03400 (PCP28_03400)	fdxA	366707..367030 (-)	324	WP_003092272.1	ferredoxin FdxA	-
PCP28_RS03405 (PCP28_03405)	mutS	367097..369664 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
PCP28_RS03410 (PCP28_03410)	-	369790..370797 (-)	1008	WP_003092265.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=702349 PCP28_RS03395 WP_003113871.1 365276..366280(+) (rpoS) [Pseudomonas aeruginosa strain 382]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=702349 PCP28_RS03395 WP_003113871.1 365276..366280(+) (rpoS) [Pseudomonas aeruginosa strain 382]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653