Detailed information NTG0702290

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PCP88_RS10950
• Genome accession: NZ_CP115291
• Coordinates: 2302736..2303740 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain F003
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2297736..2308740

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PCP88_RS10920 (PCP88_10920)	fghA	2297829..2298680 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
PCP88_RS10925 (PCP88_10925)	ispF	2298751..2299224 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PCP88_RS10930 (PCP88_10930)	truD	2299221..2300288 (+)	1068	WP_073655116.1	tRNA pseudouridine(13) synthase TruD	-
PCP88_RS10935 (PCP88_10935)	surE	2300276..2301025 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
PCP88_RS10940 (PCP88_10940)	-	2301058..2301692 (+)	635	Protein_2106	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PCP88_RS10945 (PCP88_10945)	-	2301738..2302631 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
PCP88_RS10950 (PCP88_10950)	rpoS	2302736..2303740 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PCP88_RS10955 (PCP88_10955)	fdxA	2304167..2304490 (-)	324	WP_003092272.1	ferredoxin FdxA	-
PCP88_RS10960 (PCP88_10960)	mutS	2304557..2307124 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
PCP88_RS10965 (PCP88_10965)	-	2307250..2308257 (-)	1008	WP_003098486.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=702290 PCP88_RS10950 WP_003113871.1 2302736..2303740(+) (rpoS) [Pseudomonas aeruginosa strain F003]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=702290 PCP88_RS10950 WP_003113871.1 2302736..2303740(+) (rpoS) [Pseudomonas aeruginosa strain F003]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653