Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   PCP88_RS06285 Genome accession   NZ_CP115291
Coordinates   1310698..1311063 (+) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain F003     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1305698..1316063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP88_RS06255 (PCP88_06255) pyrR 1306320..1306832 (-) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  PCP88_RS06260 (PCP88_06260) ruvX 1306944..1307378 (-) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  PCP88_RS06265 (PCP88_06265) - 1307378..1307947 (-) 570 WP_003084577.1 YqgE/AlgH family protein -
  PCP88_RS06270 (PCP88_06270) - 1307996..1308889 (-) 894 WP_003162015.1 energy transducer TonB -
  PCP88_RS06275 (PCP88_06275) gshB 1309036..1309989 (-) 954 WP_042853546.1 glutathione synthase -
  PCP88_RS06280 (PCP88_06280) pilG 1310244..1310651 (+) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  PCP88_RS06285 (PCP88_06285) pilH 1310698..1311063 (+) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  PCP88_RS06290 (PCP88_06290) - 1311114..1311650 (+) 537 WP_003084590.1 chemotaxis protein CheW -
  PCP88_RS06295 (PCP88_06295) pilJ 1311735..1313783 (+) 2049 WP_017148569.1 chemotaxis chemoreceptor PilJ -
  PCP88_RS06300 (PCP88_06300) pilK 1313844..1314719 (+) 876 WP_003100938.1 type 4 fimbrial methyltransferase PilK -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=702278 PCP88_RS06285 WP_003084587.1 1310698..1311063(+) (pilH) [Pseudomonas aeruginosa strain F003]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=702278 PCP88_RS06285 WP_003084587.1 1310698..1311063(+) (pilH) [Pseudomonas aeruginosa strain F003]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAATTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364