Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   PCP67_RS23440 Genome accession   NZ_CP115289
Coordinates   4988928..4989257 (+) Length   109 a.a.
NCBI ID   WP_003091430.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain F004     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4983928..4994257
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP67_RS23425 (PCP67_23420) - 4984573..4985523 (+) 951 WP_020750837.1 NAD-dependent epimerase/dehydratase family protein -
  PCP67_RS23430 (PCP67_23425) - 4985545..4986585 (+) 1041 WP_371032227.1 MraY family glycosyltransferase -
  PCP67_RS23435 (PCP67_23430) - 4986740..4988737 (+) 1998 WP_074222801.1 polysaccharide biosynthesis protein -
  PCP67_RS23440 (PCP67_23435) comEA/comE1 4988928..4989257 (+) 330 WP_003091430.1 ComEA family DNA-binding protein Machinery gene
  PCP67_RS23450 (PCP67_23445) - 4989474..4990670 (-) 1197 WP_003104588.1 amino acid aminotransferase -
  PCP67_RS23455 (PCP67_23450) uvrB 4990858..4992870 (+) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11367.31 Da        Isoelectric Point: 8.0459

>NTDB_id=702226 PCP67_RS23440 WP_003091430.1 4988928..4989257(+) (comEA/comE1) [Pseudomonas aeruginosa strain F004]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=702226 PCP67_RS23440 WP_003091430.1 4988928..4989257(+) (comEA/comE1) [Pseudomonas aeruginosa strain F004]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCACCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385