Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NIZ19_RS22515 Genome accession   NZ_CP099886
Coordinates   4573174..4573803 (-) Length   209 a.a.
NCBI ID   WP_000839162.1    Uniprot ID   A0A2T3RS91
Organism   Escherichia albertii strain 222_1_EW_B     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4568174..4578803
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NIZ19_RS22500 (NIZ19_22490) helD 4568416..4570470 (-) 2055 WP_256877703.1 DNA helicase IV -
  NIZ19_RS22505 (NIZ19_22495) - 4570593..4571039 (+) 447 WP_001261228.1 YccF domain-containing protein -
  NIZ19_RS22510 (NIZ19_22500) yccS 4571049..4573214 (+) 2166 WP_256877242.1 YccS family putative transporter -
  NIZ19_RS22515 (NIZ19_22505) sxy/tfoX 4573174..4573803 (-) 630 WP_000839162.1 TfoX/Sxy family DNA transformation protein Regulator
  NIZ19_RS22520 (NIZ19_22510) sulA 4574021..4574530 (+) 510 WP_000288703.1 SOS-induced cell division inhibitor SulA -
  NIZ19_RS22525 (NIZ19_22515) ompA 4574886..4575938 (+) 1053 WP_024164823.1 porin OmpA -
  NIZ19_RS22530 (NIZ19_22520) matP 4576013..4576465 (-) 453 WP_000877164.1 macrodomain Ter protein MatP -
  NIZ19_RS22535 (NIZ19_22525) - 4576651..4578411 (+) 1761 WP_256877243.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24291.21 Da        Isoelectric Point: 9.0264

>NTDB_id=702218 NIZ19_RS22515 WP_000839162.1 4573174..4573803(-) (sxy/tfoX) [Escherichia albertii strain 222_1_EW_B]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVNDTVFAMVADGELYLRACEQSVQYCVKHPPVWLTYKKCGRPVTLN
YYRVDESLWRNQQKLVRLSKYSLDAALKEKCTRNNLQRLKDLPNMSYHLEAILGEVGIKDVRTLRILGAKMCWLRLRQHN
SQVTEKILFMLEGAIIDIHEAALPVARRQELAEWAESIVPKPEFPTEPE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=702218 NIZ19_RS22515 WP_000839162.1 4573174..4573803(-) (sxy/tfoX) [Escherichia albertii strain 222_1_EW_B]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAGTCACAAGAATACCTTGCAACGTTAGGCACCATTGAATATCGATCGCT
GTTTGGCAGTTACAGTTTGACGGTTAACGATACGGTATTTGCGATGGTTGCTGATGGTGAGTTGTATCTACGGGCTTGTG
AACAAAGCGTACAGTACTGTGTAAAACATCCGCCAGTCTGGCTGACATATAAAAAGTGCGGCCGACCCGTGACTCTCAAT
TACTACCGGGTTGATGAAAGTCTATGGCGTAACCAACAGAAATTAGTTCGCTTGTCGAAATATTCCCTGGATGCTGCGCT
GAAAGAGAAATGTACGCGCAACAATCTCCAGCGACTGAAAGATTTGCCGAATATGTCTTATCATCTGGAGGCGATTCTCG
GTGAAGTGGGGATCAAGGATGTGCGAACTTTACGGATCCTTGGCGCAAAAATGTGCTGGTTGCGACTACGTCAGCATAAT
AGCCAGGTGACGGAGAAGATCTTATTCATGCTTGAAGGCGCAATTATTGATATTCATGAAGCAGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCTGAATGGGCTGAATCTATTGTGCCGAAACCAGAGTTTCCGACGGAACCTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2T3RS91

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

90.431

100

0.904