Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   PCP67_RS16095 Genome accession   NZ_CP115289
Coordinates   3420421..3420786 (+) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain F004     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3415421..3425786
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP67_RS16065 (PCP67_16065) pyrR 3416043..3416555 (-) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  PCP67_RS16070 (PCP67_16070) ruvX 3416667..3417101 (-) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  PCP67_RS16075 (PCP67_16075) - 3417101..3417670 (-) 570 WP_003084577.1 YqgE/AlgH family protein -
  PCP67_RS16080 (PCP67_16080) - 3417719..3418612 (-) 894 WP_003084580.1 TonB family protein -
  PCP67_RS16085 (PCP67_16085) gshB 3418759..3419712 (-) 954 WP_003100943.1 glutathione synthase -
  PCP67_RS16090 (PCP67_16090) pilG 3419967..3420374 (+) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  PCP67_RS16095 (PCP67_16095) pilH 3420421..3420786 (+) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  PCP67_RS16100 (PCP67_16100) - 3420837..3421373 (+) 537 WP_003084590.1 chemotaxis protein CheW -
  PCP67_RS16105 (PCP67_16105) pilJ 3421458..3423506 (+) 2049 WP_003084592.1 chemotaxis chemoreceptor PilJ -
  PCP67_RS16110 (PCP67_16110) pilK 3423567..3424442 (+) 876 WP_058156834.1 type 4 fimbrial methyltransferase PilK -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=702209 PCP67_RS16095 WP_003084587.1 3420421..3420786(+) (pilH) [Pseudomonas aeruginosa strain F004]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=702209 PCP67_RS16095 WP_003084587.1 3420421..3420786(+) (pilH) [Pseudomonas aeruginosa strain F004]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGCCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAGTTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCGCGCGACTACCTGACCAAACCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364