Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JMUB898_RS11660 Genome accession   NZ_AP018587
Coordinates   2412529..2413896 (-) Length   455 a.a.
NCBI ID   WP_002441068.1    Uniprot ID   A0A1S1GRG5
Organism   Staphylococcus caprae strain JMUB898     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2407529..2418896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMUB898_RS11645 (JMUB898_2352) cysE 2408353..2408982 (-) 630 WP_002441077.1 serine O-acetyltransferase -
  JMUB898_RS11650 (JMUB898_2353) gltX 2409400..2410854 (-) 1455 WP_002441075.1 glutamate--tRNA ligase -
  JMUB898_RS11655 (JMUB898_2354) - 2411262..2412326 (-) 1065 WP_002441071.1 PIN/TRAM domain-containing protein -
  JMUB898_RS11660 (JMUB898_2355) radA 2412529..2413896 (-) 1368 WP_002441068.1 DNA repair protein RadA Machinery gene
  JMUB898_RS11665 (JMUB898_2356) - 2414238..2416694 (-) 2457 WP_002441066.1 ATP-dependent Clp protease ATP-binding subunit -
  JMUB898_RS11670 (JMUB898_2357) - 2416709..2417713 (-) 1005 WP_002441063.1 protein arginine kinase -
  JMUB898_RS11675 (JMUB898_2358) - 2417706..2418269 (-) 564 WP_002441061.1 UvrB/UvrC motif-containing protein -
  JMUB898_RS11680 (JMUB898_2359) - 2418290..2418751 (-) 462 WP_037541112.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49895.37 Da        Isoelectric Point: 7.0051

>NTDB_id=70219 JMUB898_RS11660 WP_002441068.1 2412529..2413896(-) (radA) [Staphylococcus caprae strain JMUB898]
MAKKKVIFECMACGYQSPKWMGKCPNCGAWNQMEEIVEKAANPKHGVKTKEAAGKVQKLNSVKHETTPRILTDSKEFNRV
LGGGIVSGSLVLIGGDPGIGKSTLLLQICAALSQSKNVLYITGEESINQTKLRAERLEEDSSQLNVLAETDLEVIHQTVK
DERPDLLVVDSIQTIYHPEISSAPGSVSQVRESTQSLMNIAKQMDIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGDE
HHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVLNPSEMFLEERSTNVPGSTIVPTMEGTRPLLIEVQALVTPTTFNNPR
RMATGIDHNRLSLLMAVLEKKENYLLQQQDAYIKVAGGVKLTEPAVDLSIIVATASSFKDQAVDGLDCFVGEVGLTGEVR
RVSRIEQRIQEAAKLGFKRAIIPQTNIGGWTFPEGIQVIGVSSVHEALKYALRSS

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=70219 JMUB898_RS11660 WP_002441068.1 2412529..2413896(-) (radA) [Staphylococcus caprae strain JMUB898]
GTGGCCAAGAAAAAAGTAATATTTGAATGTATGGCGTGTGGCTATCAATCTCCTAAATGGATGGGGAAGTGTCCTAATTG
CGGTGCATGGAACCAAATGGAAGAAATTGTAGAGAAAGCTGCGAACCCTAAACATGGTGTAAAAACTAAAGAAGCAGCAG
GAAAAGTACAGAAATTAAATAGTGTTAAACATGAGACGACGCCAAGAATTCTCACAGATTCAAAAGAATTTAACCGAGTA
CTTGGTGGAGGTATTGTAAGTGGGTCACTTGTGCTTATCGGAGGAGACCCAGGTATTGGTAAATCTACATTACTGTTGCA
AATCTGTGCTGCGTTATCTCAAAGTAAAAATGTTTTATATATCACTGGTGAGGAATCGATAAATCAAACTAAACTACGTG
CTGAGCGTTTAGAAGAAGATTCTAGTCAACTCAACGTTTTAGCTGAAACGGATTTAGAAGTTATCCACCAAACCGTTAAA
GATGAACGTCCAGATCTACTCGTCGTGGATTCCATCCAAACCATTTATCATCCAGAAATAAGTTCAGCGCCAGGATCAGT
GTCTCAAGTAAGAGAAAGTACACAAAGTCTGATGAATATCGCGAAGCAAATGGATATTGCGACATTTATTGTTGGGCATG
TGACGAAAGAAGGTCAGATAGCAGGGCCGAGATTGCTAGAACATATGGTAGATACGGTGCTTTACTTTGAAGGCGATGAA
CATCATGCATACCGAATTTTAAGAGCGGTTAAAAACCGTTTTGGATCTACAAATGAGATGGGCATTTTCGAAATGAAGCA
GAGTGGTTTGAAAGGTGTCTTAAATCCTTCTGAAATGTTTCTAGAAGAACGATCAACTAATGTACCAGGATCGACCATTG
TGCCAACCATGGAAGGCACACGTCCTTTGCTGATTGAGGTACAAGCATTAGTTACACCTACTACGTTTAATAATCCTAGA
CGTATGGCTACAGGTATTGACCATAATCGGTTAAGCTTACTTATGGCAGTATTAGAAAAGAAAGAAAATTACTTGCTTCA
GCAACAAGATGCATATATCAAAGTTGCAGGTGGAGTGAAGTTAACAGAACCGGCTGTAGACCTAAGTATTATAGTAGCCA
CTGCCTCAAGCTTTAAAGATCAAGCTGTAGACGGCTTAGACTGTTTTGTAGGTGAGGTAGGTCTAACGGGCGAAGTTCGT
CGAGTCTCTCGTATAGAACAACGGATTCAAGAAGCGGCTAAACTTGGTTTCAAACGTGCGATTATCCCTCAAACAAATAT
AGGAGGGTGGACTTTCCCAGAAGGTATCCAAGTGATTGGTGTATCTTCTGTCCATGAAGCTTTAAAATATGCGCTCCGTT
CTTCATAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(353-426)

AAA domain (AAA_25)

(76-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1S1GRG5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

66.449

100

0.67
  radA Streptococcus pneumoniae Rx1

61.247

98.681

0.604
  radA Streptococcus pneumoniae D39

61.247

98.681

0.604
  radA Streptococcus pneumoniae R6

61.247

98.681

0.604
  radA Streptococcus pneumoniae TIGR4

61.247

98.681

0.604
  radA Streptococcus mitis NCTC 12261

61.247

98.681

0.604
  radA Streptococcus mitis SK321

61.247

98.681

0.604

Multiple sequence alignment