Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NIZ20_RS06360 Genome accession   NZ_CP099883
Coordinates   1346533..1347162 (+) Length   209 a.a.
NCBI ID   WP_059225154.1    Uniprot ID   -
Organism   Escherichia albertii strain 231_1_NP_B     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1341533..1352162
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NIZ20_RS06340 (NIZ20_06340) - 1341925..1343685 (-) 1761 WP_000156442.1 Lon protease family protein -
  NIZ20_RS06345 (NIZ20_06345) matP 1343871..1344323 (+) 453 WP_000877164.1 macrodomain Ter protein MatP -
  NIZ20_RS06350 (NIZ20_06350) ompA 1344398..1345450 (-) 1053 WP_024164823.1 porin OmpA -
  NIZ20_RS06355 (NIZ20_06355) sulA 1345806..1346315 (-) 510 WP_000288703.1 SOS-induced cell division inhibitor SulA -
  NIZ20_RS06360 (NIZ20_06360) sxy/tfoX 1346533..1347162 (+) 630 WP_059225154.1 TfoX/Sxy family DNA transformation protein Regulator
  NIZ20_RS06365 (NIZ20_06365) yccS 1347122..1349287 (-) 2166 WP_072251200.1 YccS family putative transporter -
  NIZ20_RS06370 (NIZ20_06370) - 1349297..1349743 (-) 447 WP_001261228.1 YccF domain-containing protein -
  NIZ20_RS06375 (NIZ20_06375) helD 1349866..1351920 (+) 2055 WP_233991590.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24275.15 Da        Isoelectric Point: 9.1951

>NTDB_id=702177 NIZ20_RS06360 WP_059225154.1 1346533..1347162(+) (sxy/tfoX) [Escherichia albertii strain 231_1_NP_B]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVNDTVFAMVADGELYLRACEQSVQYSVKHPPVWLTYKKCGRPVTLN
YYRVDESLWRNQQKLVRLSKYSLDAALKEKCTRNNLQRLKDLPNMSYHLEAILGEVGIKDVRTLRILGAKMCWLRLRQHN
SQVTEKILFMLEGAIIDIHEAALPVARRQELAEWAESIVPKPEFPTEPE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=702177 NIZ20_RS06360 WP_059225154.1 1346533..1347162(+) (sxy/tfoX) [Escherichia albertii strain 231_1_NP_B]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAGTCACAAGAATACCTTGCAACGTTAGGCACCATTGAATATCGATCGCT
GTTTGGCAGTTACAGTTTGACGGTTAACGATACGGTATTTGCGATGGTTGCTGATGGTGAGTTGTATCTACGGGCTTGTG
AACAAAGCGTACAGTACTCTGTAAAACATCCGCCAGTCTGGCTGACATATAAAAAGTGCGGCCGACCCGTGACTCTCAAT
TACTACCGGGTTGATGAAAGTCTATGGCGTAACCAACAGAAATTAGTTCGCTTGTCGAAATATTCCCTGGATGCTGCGCT
GAAAGAGAAATGTACGCGCAACAATCTCCAGCGACTGAAAGATTTGCCGAATATGTCTTATCACCTGGAGGCGATTCTCG
GTGAAGTGGGGATCAAGGATGTGCGGACTTTACGGATCCTTGGCGCAAAAATGTGCTGGTTGCGACTACGTCAGCATAAT
AGCCAGGTGACGGAGAAGATCTTATTCATGCTTGAAGGCGCAATTATTGATATTCATGAAGCAGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCTGAATGGGCTGAATCTATTGTGCCGAAACCAGAGTTTCCGACGGAACCTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

89.952

100

0.9