Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   M2Y46_RS06405 Genome accession   NZ_AP023347
Coordinates   1331516..1331983 (-) Length   155 a.a.
NCBI ID   WP_172415680.1    Uniprot ID   -
Organism   Helicobacter pylori strain JSHR6     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1326516..1336983
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2Y46_RS06390 (JSHR6_12740) - 1326906..1327688 (-) 783 WP_248415307.1 glycosyltransferase family 2 protein -
  M2Y46_RS06395 (JSHR6_12750) tlpB 1327719..1329419 (-) 1701 WP_248415308.1 methyl-accepting chemotaxis protein -
  M2Y46_RS06400 (JSHR6_12760) - 1329625..1331325 (-) 1701 WP_345893262.1 5'-nucleotidase C-terminal domain-containing protein -
  M2Y46_RS06405 (JSHR6_12770) luxS 1331516..1331983 (-) 468 WP_172415680.1 S-ribosylhomocysteine lyase Regulator
  M2Y46_RS06410 (JSHR6_12780) - 1332018..1333160 (-) 1143 WP_096464126.1 cystathionine gamma-synthase -
  M2Y46_RS06415 (JSHR6_12790) - 1333181..1334098 (-) 918 WP_248415310.1 cysteine synthase family protein -
  M2Y46_RS06420 (JSHR6_12800) - 1334206..1334784 (+) 579 WP_212883421.1 hypothetical protein -
  M2Y46_RS06425 (JSHR6_12810) dnaK 1334930..1336792 (-) 1863 WP_088357608.1 molecular chaperone DnaK -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17635.12 Da        Isoelectric Point: 6.6039

>NTDB_id=70217 M2Y46_RS06405 WP_172415680.1 1331516..1331983(-) (luxS) [Helicobacter pylori strain JSHR6]
MKTPKMNVESFNLDHTKVKAPYVRIADRKKGVNGDLIVKYDVRLKQPNKDHMDMPSLHSLEHLVAEIIRNHASYVVDWSP
MGCQTGFYLTVLNHDDYTEILEVLEKTMQDVLKATEVPASNEKQCGWAANHTLEGAQNLARAFLDKRAEWSEVGV

Nucleotide


Download         Length: 468 bp        

>NTDB_id=70217 M2Y46_RS06405 WP_172415680.1 1331516..1331983(-) (luxS) [Helicobacter pylori strain JSHR6]
ATGAAAACACCAAAAATGAATGTAGAGAGTTTTAATTTGGATCACACCAAAGTCAAAGCCCCTTATGTGCGTATCGCTGA
TCGCAAAAAGGGCGTCAATGGGGATTTGATTGTCAAATACGATGTGCGCCTCAAGCAGCCCAACAAAGATCACATGGACA
TGCCAAGTTTGCATTCTTTAGAGCATTTAGTCGCTGAAATCATCCGTAACCATGCCAGTTATGTTGTGGATTGGTCGCCT
ATGGGTTGCCAAACGGGATTTTATCTCACGGTGTTAAACCATGACGATTACACAGAGATTTTAGAGGTTTTAGAAAAGAC
GATGCAAGATGTGTTAAAGGCTACAGAAGTGCCTGCCAGCAATGAAAAGCAATGCGGTTGGGCGGCTAACCACACTTTAG
AGGGCGCACAGAATTTAGCGCGTGCTTTTTTAGACAAACGCGCTGAGTGGTCTGAAGTGGGGGTTTGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(7-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

40.426

90.968

0.368