Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   PCP67_RS07610 Genome accession   NZ_CP115289
Coordinates   1595657..1597150 (+) Length   497 a.a.
NCBI ID   WP_074222160.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain F004     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1590657..1602150
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP67_RS07580 (PCP67_07570) - 1590869..1591678 (-) 810 WP_003094343.1 ABC transporter ATP-binding protein -
  PCP67_RS07585 (PCP67_07575) kdsD 1592092..1593072 (+) 981 WP_170870978.1 arabinose-5-phosphate isomerase KdsD -
  PCP67_RS07590 (PCP67_07580) - 1593072..1593611 (+) 540 WP_074222161.1 KdsC family phosphatase -
  PCP67_RS07595 (PCP67_07585) lptC 1593620..1594192 (+) 573 WP_003094353.1 LPS export ABC transporter periplasmic protein LptC -
  PCP67_RS07600 (PCP67_07590) lptA 1594179..1594706 (+) 528 WP_003120916.1 lipopolysaccharide transport periplasmic protein LptA -
  PCP67_RS07605 (PCP67_07595) lptB 1594706..1595431 (+) 726 WP_003094355.1 LPS export ABC transporter ATP-binding protein -
  PCP67_RS07610 (PCP67_07600) rpoN/rpoN1 1595657..1597150 (+) 1494 WP_074222160.1 RNA polymerase factor sigma-54 Machinery gene
  PCP67_RS07615 (PCP67_07605) hpf 1597228..1597536 (+) 309 WP_003094359.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  PCP67_RS07620 (PCP67_07610) ptsN 1597550..1598014 (+) 465 WP_003098853.1 PTS IIA-like nitrogen regulatory protein PtsN -
  PCP67_RS07625 (PCP67_07615) rapZ 1598016..1598876 (+) 861 WP_003094361.1 RNase adapter RapZ -
  PCP67_RS07630 (PCP67_07620) - 1598906..1599178 (+) 273 WP_003094362.1 HPr family phosphocarrier protein -
  PCP67_RS07635 (PCP67_07625) - 1599275..1600207 (-) 933 WP_074222159.1 ZIP family metal transporter -
  PCP67_RS07640 (PCP67_07630) - 1600226..1600837 (-) 612 WP_003098862.1 superoxide dismutase -
  PCP67_RS07645 (PCP67_07635) - 1600850..1601299 (-) 450 WP_003094369.1 hypothetical protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 56070.21 Da        Isoelectric Point: 4.4327

>NTDB_id=702164 PCP67_RS07610 WP_074222160.1 1595657..1597150(+) (rpoN/rpoN1) [Pseudomonas aeruginosa strain F004]
MKPSLVLKMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLERQEDGDDFDNSDPLADGAEQAASSPQESPLQE
SATPSVESLDDDQWSERIPSELPVDTAWEDIYQTSASSLPSNDDDEWDFTARTSSGESLHSHLLWQVNLAPMSDTDRMIA
VTIIDSINNDGYLEESLEEILAAIDPELDVELDEVEVVLRRIQQLEPAGIGARNLRECLLLQLRQLPSTTPWLNEALRLV
SDYLDLLGGRDYSQLMRRMKLKEDELRQVIELIQCLHPRPGSQIESSEAEYIVPDVIVRKDNERWLVELNQEAMPRLRVN
ATYAGMVRRADSSADNTFMRNQLQEARWFIKSLQSRNETLMKVATQIVEHQRGFLDYGEEAMKPLVLHDIAEAVGMHEST
ISRVTTQKYMHTPRGIFELKYFFSSHVSTAEGGECSSTAIRAIIKKLVAAENAKKPLSDSKIAGLLEAQGIQVARRTVAK
YRESLGIAPSSERKRLV

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=702164 PCP67_RS07610 WP_074222160.1 1595657..1597150(+) (rpoN/rpoN1) [Pseudomonas aeruginosa strain F004]
ATGAAACCATCGCTAGTCCTCAAGATGGGCCAGCAGCTGACGATGACGCCGCAGCTGCAACAGGCCATACGCCTCCTCCA
GCTATCCACCCTGGACCTCCAGCAGGAAATCCAGGAAGCGCTGGAATCCAATCCCATGCTCGAACGCCAGGAAGACGGCG
ACGATTTCGACAACAGCGACCCTCTCGCCGATGGCGCCGAACAGGCGGCCAGCTCGCCCCAGGAGAGCCCTCTCCAGGAA
AGCGCCACGCCCAGCGTCGAAAGCCTCGACGACGACCAGTGGAGCGAACGCATACCCAGCGAGTTGCCGGTGGATACCGC
CTGGGAAGACATCTACCAGACCAGCGCCAGTAGCCTGCCCAGCAACGACGATGACGAATGGGACTTCACCGCGCGCACCA
GCAGCGGCGAGAGCCTGCACAGCCACCTGCTCTGGCAGGTCAACCTGGCACCGATGTCGGACACCGATCGGATGATCGCG
GTGACCATCATCGATAGCATCAACAACGATGGCTACCTCGAAGAGTCCCTCGAAGAAATCCTCGCCGCCATCGATCCGGA
ACTGGACGTCGAGCTCGACGAAGTGGAAGTCGTGCTACGCCGCATCCAGCAACTGGAACCCGCCGGCATCGGCGCCCGCA
ACCTGCGCGAGTGCCTGCTGCTGCAACTGCGCCAGTTGCCGTCCACCACGCCCTGGCTGAACGAAGCGCTGCGCCTGGTA
TCCGACTACCTCGACCTGCTCGGCGGCCGCGACTACAGCCAATTGATGCGGCGCATGAAGCTCAAGGAAGACGAACTGCG
CCAGGTCATCGAGCTGATCCAGTGCCTGCATCCCCGGCCCGGTTCGCAGATCGAATCGAGCGAAGCCGAATACATCGTCC
CCGACGTCATCGTGCGCAAGGACAACGAGCGCTGGCTGGTCGAGCTGAACCAGGAGGCGATGCCGCGCCTGCGCGTCAAC
GCCACCTACGCCGGCATGGTCCGCCGCGCCGATAGCAGCGCCGACAATACCTTCATGCGCAACCAGTTACAGGAAGCCCG
CTGGTTCATCAAGAGCCTGCAGAGCCGCAACGAAACGCTGATGAAGGTCGCCACCCAGATCGTCGAGCACCAGCGCGGTT
TCCTCGACTACGGCGAAGAAGCCATGAAGCCGCTGGTCCTGCACGACATCGCCGAAGCGGTGGGTATGCACGAATCGACC
ATTTCGCGGGTCACCACGCAGAAATACATGCATACGCCGCGCGGTATTTTCGAGCTGAAATATTTCTTTTCAAGTCACGT
CAGTACCGCCGAAGGCGGGGAATGCTCGTCCACCGCGATCCGCGCGATCATCAAGAAACTGGTGGCCGCGGAAAATGCGA
AAAAGCCATTGAGCGACAGCAAGATCGCTGGTTTACTGGAGGCACAGGGCATTCAAGTGGCTCGCCGCACCGTCGCCAAA
TACCGCGAATCCCTGGGCATAGCCCCTTCGAGCGAGCGCAAGCGACTGGTGTGA

Domains

Predicted by InterProScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(337-495)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(129-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

46.85

100

0.479