Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   PCP81_RS25115 Genome accession   NZ_CP115288
Coordinates   5382906..5383430 (+) Length   174 a.a.
NCBI ID   WP_003116136.1    Uniprot ID   A0A0H2ZIN8
Organism   Pseudomonas aeruginosa strain F005     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5377906..5388430
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP81_RS25095 (PCP81_25090) - 5377973..5380444 (-) 2472 WP_003095841.1 penicillin-binding protein 1A -
  PCP81_RS25100 (PCP81_25095) pilM 5380629..5381693 (+) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  PCP81_RS25105 (PCP81_25100) pilN 5381693..5382289 (+) 597 WP_003116134.1 type 4a pilus biogenesis protein PilN -
  PCP81_RS25110 (PCP81_25105) pilO 5382286..5382909 (+) 624 WP_003116135.1 type 4a pilus biogenesis protein PilO Machinery gene
  PCP81_RS25115 (PCP81_25110) comL/pilP 5382906..5383430 (+) 525 WP_003116136.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  PCP81_RS25120 (PCP81_25115) pilQ 5383484..5385616 (+) 2133 WP_003116137.1 type 4a pilus secretin PilQ Machinery gene
  PCP81_RS25125 (PCP81_25120) aroK 5385628..5386146 (+) 519 WP_003095833.1 shikimate kinase AroK -
  PCP81_RS25130 (PCP81_25125) aroB 5386196..5387302 (+) 1107 WP_003112148.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19224.07 Da        Isoelectric Point: 9.7252

>NTDB_id=702124 PCP81_RS25115 WP_003116136.1 5382906..5383430(+) (comL/pilP) [Pseudomonas aeruginosa strain F005]
MRARLILSSLLLTMLAGCGANSEFGDLQAYMNEVRARPKGNIEPLPKFQPYEAFTYSASNLRSPFQPPVKIDLTVRQKGN
KVVKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=702124 PCP81_RS25115 WP_003116136.1 5382906..5383430(+) (comL/pilP) [Pseudomonas aeruginosa strain F005]
ATGAGAGCCCGCCTGATTCTGAGCAGCTTGCTGCTCACCATGCTTGCCGGTTGCGGCGCGAATTCCGAGTTCGGCGATCT
TCAAGCCTATATGAACGAGGTACGTGCTCGACCTAAGGGCAATATCGAGCCTCTGCCGAAGTTTCAGCCATATGAAGCTT
TTACTTATAGCGCTTCGAACCTGCGTAGTCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAAGGCAAT
AAGGTGGTTAAACCCGACGAGACACGGGTCAAGCAGTTCCTGGAAGGTTTCAACATCGAAACCTTCGAGATGGTCGGCAC
ACTGTCCAACGCCCAGGGTACCTTCGCCTTGGTGAAGGGCGCGGGTGGCGTGCATCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGATGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATTGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZIN8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.628

98.851

0.362