Detailed information
Bioinformatically predicted
Overview
| Name | comGB | Type | Machinery gene |
| Locus tag | JMUB898_RS06680 | Genome accession | NZ_AP018587 |
| Coordinates | 1379227..1380294 (+) | Length | 355 a.a. |
| NCBI ID | WP_049402080.1 | Uniprot ID | - |
| Organism | Staphylococcus caprae strain JMUB898 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1374227..1385294
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JMUB898_RS06650 (JMUB898_1340) | - | 1374646..1376109 (+) | 1464 | WP_044466727.1 | rhomboid family intramembrane serine protease | - |
| JMUB898_RS06655 (JMUB898_1341) | - | 1376090..1376293 (+) | 204 | WP_002443096.1 | YqgQ family protein | - |
| JMUB898_RS06660 (JMUB898_1342) | - | 1376290..1377276 (+) | 987 | WP_002443095.1 | ROK family glucokinase | - |
| JMUB898_RS06665 (JMUB898_1343) | - | 1377276..1377599 (+) | 324 | WP_002443093.1 | MTH1187 family thiamine-binding protein | - |
| JMUB898_RS06670 (JMUB898_1344) | - | 1377603..1378226 (+) | 624 | WP_002443090.1 | MBL fold metallo-hydrolase | - |
| JMUB898_RS06675 (JMUB898_1345) | comGA | 1378281..1379255 (+) | 975 | WP_002443088.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| JMUB898_RS06680 (JMUB898_1346) | comGB | 1379227..1380294 (+) | 1068 | WP_049402080.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| JMUB898_RS06685 (JMUB898_1347) | comGC | 1380308..1380625 (+) | 318 | WP_002443081.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| JMUB898_RS12775 (JMUB898_1348) | comGD | 1380654..1381052 (+) | 399 | WP_002443080.1 | competence type IV pilus minor pilin ComGD | - |
| JMUB898_RS06695 (JMUB898_1349) | - | 1381039..1381332 (+) | 294 | WP_002443078.1 | hypothetical protein | - |
| JMUB898_RS06700 (JMUB898_1350) | - | 1381319..1381747 (+) | 429 | WP_232018998.1 | competence type IV pilus minor pilin ComGF | - |
| JMUB898_RS06710 (JMUB898_1351) | - | 1381916..1382425 (+) | 510 | WP_002443074.1 | shikimate kinase | - |
| JMUB898_RS06715 (JMUB898_1352) | gcvT | 1382651..1383742 (+) | 1092 | WP_002443072.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| JMUB898_RS06720 (JMUB898_1353) | gcvPA | 1383760..1385106 (+) | 1347 | WP_002443070.1 | aminomethyl-transferring glycine dehydrogenase subunit GcvPA | - |
Sequence
Protein
Download Length: 355 a.a. Molecular weight: 41864.99 Da Isoelectric Point: 9.8952
>NTDB_id=70209 JMUB898_RS06680 WP_049402080.1 1379227..1380294(+) (comGB) [Staphylococcus caprae strain JMUB898]
MKRLSTNIFKFKKRKNLTEPQLIELLQRLNQLLQNGFTLFESFSFLNLHFPYKNKTIGQNIIESLQTGATCYEILKIIGY
PEIILNQIKFAEQYGKLENVITDSIDYMKRNYKAKKALIKTIQYPIVLISIFLVMLIVLNMTVIPQFQQLYSTMNVELST
FQNILTFIITKLPNFLFLFLMLSMIIYFSFITLLNKLPIDKKIDYILKIPILNSYYKIYRTYQFSNELSLFYKNGVSLQS
IVFIYQNEQNNEFFKYLGSQLLEGADNGRTLPLILKNLKCFKNDLIKFIEQGEKSGKLDIELKLYSQMLLQHFEDKVIKQ
TKLIQPVIFFILGLFIVSLYLVIMLPMFELMQTIK
MKRLSTNIFKFKKRKNLTEPQLIELLQRLNQLLQNGFTLFESFSFLNLHFPYKNKTIGQNIIESLQTGATCYEILKIIGY
PEIILNQIKFAEQYGKLENVITDSIDYMKRNYKAKKALIKTIQYPIVLISIFLVMLIVLNMTVIPQFQQLYSTMNVELST
FQNILTFIITKLPNFLFLFLMLSMIIYFSFITLLNKLPIDKKIDYILKIPILNSYYKIYRTYQFSNELSLFYKNGVSLQS
IVFIYQNEQNNEFFKYLGSQLLEGADNGRTLPLILKNLKCFKNDLIKFIEQGEKSGKLDIELKLYSQMLLQHFEDKVIKQ
TKLIQPVIFFILGLFIVSLYLVIMLPMFELMQTIK
Nucleotide
Download Length: 1068 bp
>NTDB_id=70209 JMUB898_RS06680 WP_049402080.1 1379227..1380294(+) (comGB) [Staphylococcus caprae strain JMUB898]
GTGAAGAGATTGTCGACAAATATATTTAAATTTAAAAAGCGAAAAAATCTTACCGAGCCTCAGTTAATTGAATTACTTCA
ACGACTTAATCAATTATTACAAAATGGCTTTACTTTATTTGAAAGTTTCAGCTTTCTAAATTTACACTTCCCTTATAAAA
ATAAAACGATAGGTCAAAATATCATTGAATCATTACAAACAGGCGCAACATGTTATGAAATTTTAAAAATAATAGGCTAT
CCTGAAATTATTCTTAATCAAATTAAATTCGCAGAACAATATGGAAAACTTGAGAATGTGATAACAGATTCAATTGATTA
TATGAAGAGGAATTATAAAGCTAAAAAAGCACTCATTAAAACCATACAATATCCCATAGTATTAATTAGCATCTTCCTAG
TGATGCTTATCGTTTTGAATATGACAGTTATTCCACAGTTCCAACAATTATATTCTACGATGAATGTAGAATTATCTACC
TTTCAAAATATACTTACTTTTATCATAACGAAACTTCCAAATTTTTTATTTCTATTTCTAATGTTATCAATGATCATTTA
CTTTTCATTCATCACACTTTTAAATAAATTACCCATTGATAAAAAAATAGATTACATCCTCAAAATTCCAATTTTAAACT
CTTATTACAAAATATATAGAACTTATCAATTTTCCAATGAACTTTCATTATTCTATAAAAACGGTGTTAGTCTTCAAAGC
ATCGTCTTTATCTATCAAAATGAACAAAACAACGAATTCTTTAAATACTTGGGAAGTCAATTATTAGAAGGAGCTGATAA
CGGAAGAACACTTCCGCTTATATTAAAAAATTTAAAGTGCTTTAAAAATGATTTAATAAAATTTATCGAGCAAGGAGAAA
AAAGTGGAAAGTTAGATATAGAGCTTAAATTATATAGTCAAATGCTATTGCAACATTTTGAAGATAAAGTCATAAAACAA
ACAAAATTGATCCAACCAGTTATTTTCTTTATTTTAGGCTTGTTTATTGTGTCTTTATATCTCGTCATCATGCTACCTAT
GTTTGAACTTATGCAAACGATTAAGTAA
GTGAAGAGATTGTCGACAAATATATTTAAATTTAAAAAGCGAAAAAATCTTACCGAGCCTCAGTTAATTGAATTACTTCA
ACGACTTAATCAATTATTACAAAATGGCTTTACTTTATTTGAAAGTTTCAGCTTTCTAAATTTACACTTCCCTTATAAAA
ATAAAACGATAGGTCAAAATATCATTGAATCATTACAAACAGGCGCAACATGTTATGAAATTTTAAAAATAATAGGCTAT
CCTGAAATTATTCTTAATCAAATTAAATTCGCAGAACAATATGGAAAACTTGAGAATGTGATAACAGATTCAATTGATTA
TATGAAGAGGAATTATAAAGCTAAAAAAGCACTCATTAAAACCATACAATATCCCATAGTATTAATTAGCATCTTCCTAG
TGATGCTTATCGTTTTGAATATGACAGTTATTCCACAGTTCCAACAATTATATTCTACGATGAATGTAGAATTATCTACC
TTTCAAAATATACTTACTTTTATCATAACGAAACTTCCAAATTTTTTATTTCTATTTCTAATGTTATCAATGATCATTTA
CTTTTCATTCATCACACTTTTAAATAAATTACCCATTGATAAAAAAATAGATTACATCCTCAAAATTCCAATTTTAAACT
CTTATTACAAAATATATAGAACTTATCAATTTTCCAATGAACTTTCATTATTCTATAAAAACGGTGTTAGTCTTCAAAGC
ATCGTCTTTATCTATCAAAATGAACAAAACAACGAATTCTTTAAATACTTGGGAAGTCAATTATTAGAAGGAGCTGATAA
CGGAAGAACACTTCCGCTTATATTAAAAAATTTAAAGTGCTTTAAAAATGATTTAATAAAATTTATCGAGCAAGGAGAAA
AAAGTGGAAAGTTAGATATAGAGCTTAAATTATATAGTCAAATGCTATTGCAACATTTTGAAGATAAAGTCATAAAACAA
ACAAAATTGATCCAACCAGTTATTTTCTTTATTTTAGGCTTGTTTATTGTGTCTTTATATCTCGTCATCATGCTACCTAT
GTTTGAACTTATGCAAACGATTAAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGB | Staphylococcus aureus MW2 |
49.157 |
100 |
0.493 |
| comGB | Staphylococcus aureus N315 |
49.157 |
100 |
0.493 |