Detailed information NTG0702041

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PCP57_RS26075
• Genome accession: NZ_CP115287
• Coordinates: 5617317..5618321 (-)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain F006
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 5612317..5623321

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PCP57_RS26060 (PCP57_26055)	-	5612792..5613799 (+)	1008	WP_033974397.1	TolB family protein	-
PCP57_RS26065 (PCP57_26060)	mutS	5613934..5616501 (+)	2568	WP_071546755.1	DNA mismatch repair protein MutS	-
PCP57_RS26070 (PCP57_26065)	fdxA	5616568..5616891 (+)	324	WP_003092272.1	ferredoxin FdxA	-
PCP57_RS26075 (PCP57_26070)	rpoS	5617317..5618321 (-)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PCP57_RS26080 (PCP57_26075)	-	5618426..5619319 (-)	894	WP_058016869.1	peptidoglycan DD-metalloendopeptidase family protein	-
PCP57_RS26085 (PCP57_26080)	-	5619365..5620000 (-)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PCP57_RS26090 (PCP57_26085)	surE	5620033..5620782 (-)	750	WP_033975657.1	5'/3'-nucleotidase SurE	-
PCP57_RS26095 (PCP57_26090)	truD	5620770..5621837 (-)	1068	WP_033974209.1	tRNA pseudouridine(13) synthase TruD	-
PCP57_RS26100 (PCP57_26095)	ispF	5621834..5622307 (-)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PCP57_RS26105 (PCP57_26100)	fghA	5622378..5623229 (-)	852	WP_058016870.1	S-formylglutathione hydrolase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=702041 PCP57_RS26075 WP_003113871.1 5617317..5618321(-) (rpoS) [Pseudomonas aeruginosa strain F006]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=702041 PCP57_RS26075 WP_003113871.1 5617317..5618321(-) (rpoS) [Pseudomonas aeruginosa strain F006]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATCCGTTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653