Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   PCP57_RS15120 Genome accession   NZ_CP115287
Coordinates   3231602..3232198 (+) Length   198 a.a.
NCBI ID   WP_033972719.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain F006     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3226602..3237198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP57_RS15095 (PCP57_15100) - 3227513..3227890 (+) 378 WP_033972724.1 hypothetical protein -
  PCP57_RS15105 (PCP57_15110) - 3228144..3229010 (-) 867 WP_083556748.1 substrate-binding periplasmic protein -
  PCP57_RS15110 (PCP57_15115) dnaX 3229047..3231151 (+) 2105 Protein_2974 DNA polymerase III subunit gamma/tau -
  PCP57_RS15115 (PCP57_15120) - 3231197..3231523 (+) 327 WP_033972720.1 YbaB/EbfC family nucleoid-associated protein -
  PCP57_RS15120 (PCP57_15125) recR 3231602..3232198 (+) 597 WP_033972719.1 recombination mediator RecR Machinery gene
  PCP57_RS15125 (PCP57_15130) - 3232321..3233469 (+) 1149 WP_272552128.1 acyl-CoA dehydrogenase family protein -
  PCP57_RS15130 (PCP57_15135) - 3233482..3234021 (-) 540 WP_033972716.1 CbrC family protein -
  PCP57_RS15135 (PCP57_15140) - 3234095..3234982 (-) 888 WP_328991323.1 SDR family NAD(P)-dependent oxidoreductase -
  PCP57_RS15140 (PCP57_15145) - 3234979..3236562 (-) 1584 WP_073649339.1 flavin-containing monooxygenase -
  PCP57_RS15145 (PCP57_15150) - 3236685..3236804 (+) 120 Protein_2981 TetR family transcriptional regulator -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21201.48 Da        Isoelectric Point: 6.0063

>NTDB_id=702011 PCP57_RS15120 WP_033972719.1 3231602..3232198(+) (recR) [Pseudomonas aeruginosa strain F006]
MSFSPLIRQLIESLRILPGVGQKSAQRMALMLLERDRSGGLKLAQALTAAMEGVGHCRQCRTLSEEELCPQCADPRRDDS
LLCVVEGPLDVFAVEQTGYRGRYFVLKGHLSPLDGLGPEAIGIPELEARIRDGVFSEVILATNPTVEGEATAHYIAQLLA
GRGLTLSRIAHGVPLGGELELVDGGTLAHALAGRRPIS

Nucleotide


Download         Length: 597 bp        

>NTDB_id=702011 PCP57_RS15120 WP_033972719.1 3231602..3232198(+) (recR) [Pseudomonas aeruginosa strain F006]
ATGAGTTTCAGCCCGCTGATCCGCCAACTGATCGAGTCCCTGCGCATTCTTCCCGGTGTCGGGCAGAAGTCGGCCCAGCG
CATGGCGCTGATGCTGCTGGAGCGCGATCGCAGCGGCGGCCTGAAGCTGGCCCAGGCGTTGACCGCCGCGATGGAAGGGG
TCGGTCATTGCCGGCAGTGCCGTACCCTCAGCGAGGAGGAGCTGTGCCCGCAGTGCGCCGACCCGCGACGCGACGACTCG
CTGCTCTGCGTGGTGGAAGGTCCGCTGGACGTGTTCGCGGTGGAGCAGACCGGCTACCGCGGCCGCTATTTCGTGCTCAA
GGGACACCTGTCGCCGCTCGACGGCCTGGGGCCGGAGGCGATCGGCATTCCCGAACTGGAAGCGCGGATCAGGGACGGAG
TCTTCAGCGAGGTGATCCTCGCCACCAACCCCACTGTCGAAGGCGAGGCCACCGCCCACTATATCGCCCAGCTACTGGCC
GGCCGCGGCCTGACCTTGTCGCGTATCGCCCATGGCGTGCCGCTGGGCGGCGAGCTGGAACTGGTCGATGGCGGCACCTT
GGCCCACGCCCTGGCCGGACGGCGGCCGATCTCCTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-78)

Toprim domain (Toprim_4)

(81-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.241

100

0.485
  recR Bacillus subtilis subsp. subtilis str. 168

48.469

98.99

0.48