Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   M2Y46_RS04230 Genome accession   NZ_AP023347
Coordinates   899184..900704 (-) Length   506 a.a.
NCBI ID   WP_248415095.1    Uniprot ID   -
Organism   Helicobacter pylori strain JSHR6     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 894184..905704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2Y46_RS04215 (JSHR6_08400) - 895108..895860 (-) 753 WP_096423884.1 hypothetical protein -
  M2Y46_RS04220 (JSHR6_08410) - 895838..897064 (-) 1227 WP_248415093.1 DNA cytosine methyltransferase -
  M2Y46_RS04225 (JSHR6_08420) - 897099..899159 (-) 2061 WP_248415094.1 heavy metal translocating P-type ATPase -
  M2Y46_RS04230 (JSHR6_08430) comM 899184..900704 (-) 1521 WP_248415095.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  M2Y46_RS04235 (JSHR6_08440) def 900707..901234 (-) 528 WP_001185877.1 peptide deformylase -
  M2Y46_RS04240 (JSHR6_08450) clpP 901239..901826 (-) 588 WP_000540571.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  M2Y46_RS04245 (JSHR6_08460) tig 901849..903204 (-) 1356 WP_248415096.1 trigger factor -
  M2Y46_RS04250 (JSHR6_08470) - 903317..904153 (-) 837 WP_248415097.1 outer membrane protein -
  M2Y46_RS04255 (JSHR6_08480) hpaA 904176..904958 (-) 783 WP_130779517.1 flagellar sheath lipoprotein HpaA -
  M2Y46_RS04260 (JSHR6_08490) moaC 905077..905553 (-) 477 WP_001131566.1 cyclic pyranopterin monophosphate synthase MoaC -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 57234.30 Da        Isoelectric Point: 8.2333

>NTDB_id=70201 M2Y46_RS04230 WP_248415095.1 899184..900704(-) (comM) [Helicobacter pylori strain JSHR6]
MINTIFCATMQRGVAEIVAVEATFTRALPAFVISGLANSSIQEARQRVQSALQNNDFTFPPLKITINLSPSDLPKSGSHF
DLPIALLIALQKQELAFKEWFAFGELGLDGKIKPNPNIFPMLLDIAIKHPHAKVIAPKANEELFSLIPNLQCFFVEHFKE
ALEILQNPEIKADTHTKKLPFKTIELNDKEYYFSDAYALDFKEVKGQAVAKEAALIASAGFHNLILEGSPGCGKSMIINR
MRYILPPLSLNEILEATKLRILSEQDSAYYPLRSFRNPHQSASKSSILGSSSLKEPKPGEIALAHNGMLFFDELPHFKKD
ILEALREPLENNKLVISRVHSKIEYETSFLFVGAQNPCLCGNLLSITKACRCQDREITQYKNRLSEPFLDRIDLFVQMEE
GNYKDTPSHSWTSKEMHQLVLLAFKQQKLRKQSAFNGKLNEEQIERFCPLNAEVQKLLEQAIERFNLSMRSVNKVKKVAR
TIADLNACEDIEKSHMLKALSFRKIS

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=70201 M2Y46_RS04230 WP_248415095.1 899184..900704(-) (comM) [Helicobacter pylori strain JSHR6]
ATGATTAACACGATATTTTGTGCAACCATGCAAAGGGGAGTGGCAGAGATCGTGGCTGTGGAAGCGACTTTCACAAGGGC
TTTACCGGCGTTTGTGATTTCAGGCTTGGCTAATAGCTCTATCCAAGAAGCCAGACAGCGGGTCCAATCGGCTTTACAAA
ATAACGATTTCACTTTCCCGCCTTTAAAAATCACCATCAACCTTTCCCCTTCAGATTTGCCTAAATCCGGGAGCCATTTT
GATTTGCCTATCGCTCTTTTAATCGCTTTGCAAAAACAAGAGTTGGCTTTTAAAGAGTGGTTTGCTTTTGGGGAGTTGGG
GCTTGATGGCAAGATCAAACCCAATCCTAACATTTTCCCCATGCTTTTAGACATTGCCATCAAACACCCCCATGCTAAAG
TCATTGCGCCTAAGGCTAATGAGGAGCTTTTTTCGCTCATTCCTAATTTGCAATGCTTTTTTGTGGAGCATTTTAAAGAA
GCTTTAGAAATCTTGCAAAACCCTGAAATCAAAGCAGACACCCACACGAAAAAACTACCTTTTAAAACGATAGAGTTGAA
CGATAAAGAGTATTATTTTTCAGACGCCTATGCCTTAGATTTTAAAGAAGTTAAGGGGCAAGCTGTCGCTAAAGAAGCTG
CTTTGATCGCTAGCGCTGGGTTTCATAACTTGATTTTAGAGGGAAGTCCAGGGTGTGGGAAAAGCATGATCATCAATCGC
ATGCGTTATATCTTGCCCCCATTGAGCCTGAATGAAATCCTAGAAGCGACAAAATTACGCATTTTAAGCGAGCAAGACAG
CGCCTATTACCCCTTAAGGAGTTTTAGAAACCCTCACCAAAGCGCTTCAAAATCCAGCATTTTAGGCTCAAGCTCTCTAA
AAGAGCCAAAACCTGGCGAAATCGCATTAGCGCATAACGGCATGCTTTTTTTTGATGAATTGCCTCATTTTAAAAAGGAT
ATTTTGGAAGCTTTAAGAGAGCCTTTAGAAAACAATAAATTGGTGATCTCACGAGTGCATAGCAAAATTGAATACGAAAC
CTCTTTTTTATTTGTGGGGGCTCAAAACCCTTGCTTGTGCGGGAATTTACTCAGTATAACCAAAGCATGCCGTTGCCAAG
ATAGAGAAATCACGCAGTATAAAAACCGCTTGAGCGAGCCTTTTTTGGATAGGATTGATTTGTTTGTGCAAATGGAAGAG
GGGAATTATAAAGACACGCCGTCGCATTCTTGGACTTCAAAAGAGATGCACCAATTGGTATTATTAGCTTTCAAACAGCA
AAAATTAAGGAAACAGAGCGCTTTTAATGGTAAGCTTAATGAAGAGCAGATAGAACGATTTTGTCCTTTAAACGCTGAAG
TGCAAAAGTTGTTAGAGCAGGCGATTGAAAGGTTTAATCTGTCCATGCGCTCTGTTAATAAGGTCAAAAAAGTCGCTAGG
ACAATTGCGGATTTAAACGCTTGCGAGGATATAGAAAAATCTCACATGCTTAAAGCGCTGAGTTTTAGAAAGATTTCTTA
A

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(20-140)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-403)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-503)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

97.233

100

0.972
  comM Acinetobacter baylyi ADP1

36.204

100

0.366