Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   PCP57_RS09165 Genome accession   NZ_CP115287
Coordinates   1984972..1985529 (-) Length   185 a.a.
NCBI ID   WP_003125211.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain F006     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1979972..1990529
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP57_RS09150 (PCP57_09160) pilY1 1980070..1983555 (-) 3486 WP_058179499.1 type 4a pilus biogenesis protein PilY1 -
  PCP57_RS09155 (PCP57_09165) pilX 1983567..1984154 (-) 588 WP_033972921.1 type 4a pilus minor pilin PilX -
  PCP57_RS09160 (PCP57_09170) pilW 1984151..1984975 (-) 825 WP_033976380.1 type 4a pilus minor pilin PilW -
  PCP57_RS09165 (PCP57_09175) pilV 1984972..1985529 (-) 558 WP_003125211.1 type 4a pilus minor pilin PilV Machinery gene
  PCP57_RS09170 (PCP57_09180) - 1985520..1986026 (-) 507 WP_003134935.1 GspH/FimT family pseudopilin -
  PCP57_RS09175 (PCP57_09185) - 1986132..1986641 (-) 510 WP_033976381.1 GspH/FimT family pseudopilin -
  PCP57_RS09180 (PCP57_09190) thiO 1986776..1987870 (+) 1095 WP_039028141.1 glycine oxidase ThiO -
  PCP57_RS09185 (PCP57_09195) pilR 1987916..1989253 (-) 1338 WP_003094694.1 two-component system response regulator PilR -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20087.19 Da        Isoelectric Point: 8.2171

>NTDB_id=701988 PCP57_RS09165 WP_003125211.1 1984972..1985529(-) (pilV) [Pseudomonas aeruginosa strain F006]
MLLKSRHRSLYQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=701988 PCP57_RS09165 WP_003125211.1 1984972..1985529(-) (pilV) [Pseudomonas aeruginosa strain F006]
ATGCTATTGAAATCGCGACACAGGTCGCTGTACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGTACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGATACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

98.919

100

0.989