Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   M2Y46_RS03555 Genome accession   NZ_AP023347
Coordinates   748242..751067 (+) Length   941 a.a.
NCBI ID   WP_248415714.1    Uniprot ID   -
Organism   Helicobacter pylori strain JSHR6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 743242..756067
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2Y46_RS03530 - 744333..744633 (-) 301 Protein_680 hypothetical protein -
  M2Y46_RS03535 (JSHR6_07000) - 744617..745519 (-) 903 WP_248415712.1 S-adenosyl-l-methionine hydroxide adenosyltransferase family protein -
  M2Y46_RS03540 (JSHR6_07010) - 745764..746108 (-) 345 WP_015642781.1 hypothetical protein -
  M2Y46_RS03545 (JSHR6_07020) rsmH 746128..747054 (-) 927 WP_248415713.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  M2Y46_RS03550 (JSHR6_07030) hopE 747247..748068 (-) 822 WP_171930395.1 Hop family outer membrane protein HopE -
  M2Y46_RS03555 (JSHR6_07040) uvrA 748242..751067 (+) 2826 WP_248415714.1 excinuclease ABC subunit UvrA Machinery gene
  M2Y46_RS03560 (JSHR6_07050) flgR 751385..752530 (-) 1146 WP_248415715.1 sigma-54 dependent transcriptional regulator -
  M2Y46_RS03565 (JSHR6_07060) - 752527..753000 (-) 474 WP_001867474.1 hypothetical protein -
  M2Y46_RS03570 (JSHR6_07070) gyrA 753000..755486 (-) 2487 WP_248415716.1 DNA topoisomerase (ATP-hydrolyzing) subunit A -
  M2Y46_RS03575 (JSHR6_07080) - 755506..755892 (-) 387 WP_001279184.1 diacylglycerol kinase -

Sequence

Protein


Download         Length: 941 a.a.        Molecular weight: 104840.73 Da        Isoelectric Point: 7.7530

>NTDB_id=70198 M2Y46_RS03555 WP_248415714.1 748242..751067(+) (uvrA) [Helicobacter pylori strain JSHR6]
MQHKTIMDKIIIQGARENNLKNIFLEIPKNQFVVFTGLSGSGKSTLAFDTLYAEGQRRYLESLSSYARQFLDKVGKPNVD
KIEGLTPAIAIDQKTTSKNPRSTVGTITEIYDYLRLLFARIGEQFCPTCLEPISSMSASDIISQICHLEENSKIIILAPI
IKDKKGSFNDKLESLRLKGYVRAFVDGVMVRLDEEIHLHKTKKHTIEAVVDRVVINSENSSRIASAVEKALKESYGELEV
EILQDNAPSIRKHYSEHKACFKCKMSFEELEPLSFSFNSPKGACESCLGLGTKFSLDISKILDPNTPLNQGAIKVIFGYN
RSYYAQMFEGFCEYNGIDTAFCFNELNKEQQDALLYGNGTEISFHFKNSPLKRPWKGIIQIAYDMFKEQKDLSDYMSEKT
CSSCEGHRLKASSLSVQVAGLKMADFLTKPIEEVYHFFNDPTHFSYLNEQEKKIAEPILKEILERVFFLYDVGLGYLTLG
RDARTISGGESQRIRIASQIGSGLTGVLYVLDEPSIGLHEKDTLKLINTLRNLQKKGNTLIVVEHDKETIKHADFVVDIG
PKAGRHGGEVVFSGSVKDLLQNNHSTALYLNGTKKIERPKLELPKEKHFLEIKNVNINNIKNLSVQIPLKQLVCITGVSG
SGKSSLILQTLLPTAQTLLNHAKKIQSLNGVEIVGLEHLDKVIYLDQAPIGKTPRSNPATYTGVMDEIRILFAEQKEAKI
LGYSASRFSFNVKGGRCEKCQGDGDIKIEMHFLPDVLVQCDSCKGAKYNPQTLEIKVKGKSIADVLNMSVEEAYEFFAKF
PKIAVKLKTLIDVGLGYITLGQNATTLSGGEAQRIKLAKELSKKDTGKTLYILDEPTTGLHFEDVNHLLQVLHSLVALGN
SMIVIEHNLDIIKNADYIIDMGPDGGDKGGKIIASGTPLEVAKNYEKTQSYTGKFLALELK

Nucleotide


Download         Length: 2826 bp        

>NTDB_id=70198 M2Y46_RS03555 WP_248415714.1 748242..751067(+) (uvrA) [Helicobacter pylori strain JSHR6]
TTGCAACATAAAACCATTATGGATAAGATCATTATTCAAGGGGCTAGGGAAAATAATCTCAAAAATATTTTTTTAGAAAT
CCCTAAAAACCAATTTGTTGTTTTTACCGGATTAAGCGGTTCGGGTAAATCCACTCTGGCGTTTGACACTTTATACGCTG
AAGGCCAAAGGCGCTATTTAGAGAGTTTGTCCAGCTATGCGAGGCAATTTTTAGACAAAGTGGGTAAGCCTAATGTGGAT
AAAATTGAAGGCCTAACCCCTGCGATTGCTATTGATCAAAAAACCACTTCTAAAAACCCTAGATCCACTGTGGGGACGAT
CACTGAGATTTATGATTATTTAAGGTTGTTGTTTGCAAGGATTGGGGAGCAATTTTGCCCCACATGTTTAGAGCCCATTA
GTTCTATGAGCGCGAGCGATATTATTTCTCAAATCTGTCATTTAGAAGAAAATTCTAAAATCATTATTCTAGCCCCCATT
ATTAAAGATAAAAAAGGTTCGTTTAACGATAAATTAGAGAGCTTGCGTTTGAAGGGGTATGTGAGGGCTTTTGTTGATGG
GGTGATGGTGCGTTTAGATGAAGAAATCCATTTGCACAAAACCAAAAAACACACCATTGAAGCGGTGGTGGATAGGGTGG
TTATCAATAGCGAAAATTCTTCACGGATCGCTAGCGCAGTAGAAAAAGCCCTTAAAGAAAGCTATGGGGAATTAGAAGTG
GAAATCTTGCAAGACAACGCGCCAAGCATCAGGAAGCATTACAGCGAGCATAAGGCATGCTTTAAATGCAAGATGAGTTT
TGAAGAATTAGAGCCTTTGAGTTTTTCATTCAATTCGCCTAAAGGGGCGTGCGAGAGTTGTTTGGGTTTGGGGACAAAAT
TCAGCTTAGATATTAGTAAGATTTTAGATCCTAACACGCCTTTAAATCAAGGAGCGATTAAAGTGATTTTTGGGTATAAC
CGCAGTTATTACGCTCAAATGTTTGAGGGCTTTTGCGAATACAATGGCATTGACACCGCATTTTGTTTTAACGAATTGAA
TAAAGAGCAACAGGATGCTCTTTTGTATGGGAATGGCACTGAAATCAGCTTTCATTTTAAAAATAGCCCTTTAAAACGAC
CTTGGAAAGGCATTATCCAAATCGCTTATGACATGTTTAAAGAGCAAAAGGATTTGAGCGATTACATGAGCGAAAAAACC
TGTTCTTCGTGCGAGGGGCATCGTTTGAAAGCTTCAAGTTTGAGCGTTCAAGTCGCTGGCTTGAAAATGGCGGATTTTTT
AACTAAGCCCATTGAAGAGGTCTATCACTTTTTTAATGATCCCACGCATTTTAGCTATCTTAACGAGCAAGAAAAAAAGA
TCGCTGAACCCATTTTAAAAGAGATTTTAGAAAGGGTGTTTTTTTTATACGATGTGGGGCTAGGGTATTTGACTTTAGGG
CGGGATGCACGAACGATTAGTGGAGGGGAGAGCCAAAGGATACGAATCGCTAGTCAAATCGGGAGCGGTCTGACAGGGGT
TTTGTATGTTTTAGACGAGCCTAGCATTGGCTTGCATGAAAAAGACACGCTCAAACTCATCAACACCCTTAGGAATTTGC
AAAAAAAGGGGAACACGCTCATTGTCGTAGAGCATGATAAAGAGACAATTAAGCATGCGGATTTTGTTGTGGATATTGGG
CCAAAGGCTGGAAGGCATGGGGGTGAAGTGGTTTTTAGCGGGAGCGTAAAAGATTTATTGCAAAACAACCATTCTACCGC
CTTATATCTCAACGGCACTAAAAAGATTGAGCGCCCTAAATTGGAACTCCCTAAAGAAAAGCATTTTTTAGAAATTAAAA
ATGTCAATATCAATAACATTAAGAATTTGAGCGTTCAAATCCCTTTAAAACAATTAGTGTGCATTACTGGGGTGAGCGGG
AGCGGTAAAAGCTCGCTGATTTTACAAACCCTTTTACCCACCGCTCAAACCCTTTTAAACCATGCTAAAAAAATTCAAAG
CTTGAATGGGGTGGAGATTGTAGGGTTGGAGCATTTGGATAAAGTGATTTATTTAGACCAAGCCCCCATAGGCAAAACCC
CACGGAGCAACCCTGCCACTTATACAGGAGTGATGGATGAAATCAGGATTTTATTCGCCGAGCAAAAAGAAGCTAAAATT
TTAGGCTATAGTGCAAGCCGTTTTAGCTTTAATGTTAAAGGGGGGCGGTGTGAGAAATGCCAAGGCGATGGGGATATTAA
AATAGAAATGCACTTTTTGCCTGATGTGTTAGTCCAATGCGATAGCTGTAAGGGCGCTAAATACAACCCCCAAACTTTAG
AAATCAAGGTGAAAGGTAAATCCATTGCCGATGTGTTGAACATGAGCGTGGAAGAAGCCTATGAATTTTTTGCTAAATTC
CCTAAAATCGCTGTGAAGTTAAAAACCCTTATAGATGTGGGCTTGGGCTATATCACTTTAGGGCAAAACGCTACGACTTT
AAGCGGGGGGGAGGCTCAAAGGATCAAATTAGCTAAAGAATTGAGTAAAAAAGACACAGGCAAAACCCTTTATATTTTAG
ATGAGCCTACCACTGGTTTGCATTTTGAAGATGTGAATCACCTTTTACAAGTCTTGCATTCTTTAGTGGCGTTAGGCAAT
TCCATGATAGTGATTGAGCATAATTTAGACATTATTAAAAACGCTGACTACATTATAGACATGGGGCCTGATGGGGGGGA
TAAGGGCGGGAAAATCATTGCGAGCGGCACGCCTTTAGAGGTGGCTAAAAATTATGAAAAAACCCAAAGCTATACGGGAA
AATTTTTAGCTTTAGAATTGAAATAG

Domains

Predicted by InterProScan.

UvrA interaction domain (UvrA_inter)

(137-243)

UvrA DNA-binding domain (UvrA_DNA-bind)

(297-390)

ABC transporter (ABC_tran)

(621-857)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

49.948

100

0.508
  uvrA Streptococcus pneumoniae TIGR4

49.948

100

0.508
  uvrA Streptococcus pneumoniae D39

49.948

100

0.508

Multiple sequence alignment