Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   PCP57_RS06545 Genome accession   NZ_CP115287
Coordinates   1400032..1400628 (+) Length   198 a.a.
NCBI ID   WP_003095839.1    Uniprot ID   G3XD30
Organism   Pseudomonas aeruginosa strain F006     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1395032..1405628
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP57_RS06535 (PCP57_06540) - 1396312..1398783 (-) 2472 WP_039026606.1 penicillin-binding protein 1A -
  PCP57_RS06540 (PCP57_06545) pilM 1398968..1400032 (+) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  PCP57_RS06545 (PCP57_06550) pilN 1400032..1400628 (+) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  PCP57_RS06550 (PCP57_06555) pilO 1400625..1401248 (+) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  PCP57_RS06555 (PCP57_06560) comL/pilP 1401245..1401769 (+) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  PCP57_RS06560 (PCP57_06565) pilQ 1401823..1403967 (+) 2145 WP_083556223.1 type 4a pilus secretin PilQ Machinery gene
  PCP57_RS06565 (PCP57_06570) aroK 1403979..1404497 (+) 519 WP_003095833.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22213.55 Da        Isoelectric Point: 10.0895

>NTDB_id=701979 PCP57_RS06545 WP_003095839.1 1400032..1400628(+) (pilN) [Pseudomonas aeruginosa strain F006]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=701979 PCP57_RS06545 WP_003095839.1 1400032..1400628(+) (pilN) [Pseudomonas aeruginosa strain F006]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCTTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCGGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGACTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAGTTGAAGTCGCGGCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGGCGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATCGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGTTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGTGCAGTGGACCAGGCCAACGTATTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAGGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5EOU

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369