Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   JMUB898_RS04540 Genome accession   NZ_AP018587
Coordinates   962740..963456 (-) Length   238 a.a.
NCBI ID   WP_002445329.1    Uniprot ID   -
Organism   Staphylococcus caprae strain JMUB898     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 957740..968456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMUB898_RS04520 (JMUB898_0914) - 958107..959201 (+) 1095 WP_044466875.1 YeeE/YedE family protein -
  JMUB898_RS04525 (JMUB898_0915) - 959214..959438 (+) 225 WP_002445323.1 sulfurtransferase TusA family protein -
  JMUB898_RS04530 (JMUB898_0916) - 959617..960867 (+) 1251 WP_044466874.1 ammonium transporter -
  JMUB898_RS12855 - 960998..961093 (+) 96 Protein_882 LacI family transcriptional regulator -
  JMUB898_RS04535 (JMUB898_0917) - 961192..962667 (+) 1476 WP_044466873.1 sucrose-6-phosphate hydrolase -
  JMUB898_RS04540 (JMUB898_0918) agrA 962740..963456 (-) 717 WP_002445329.1 quorum-sensing response regulator AgrA Regulator
  JMUB898_RS04545 (JMUB898_0919) agrC 963471..964766 (-) 1296 WP_049402089.1 quorum-sensing sensor histidine kinase AgrC -
  JMUB898_RS04550 (JMUB898_0920) agrD 964801..964944 (-) 144 WP_121909995.1 cyclic lactone autoinducer peptide AgrD -
  JMUB898_RS04555 (JMUB898_0921) - 964947..965513 (-) 567 WP_044466871.1 accessory gene regulator AgrB -
  JMUB898_RS04560 (JMUB898_0922) - 965831..965908 (+) 78 WP_080981464.1 delta-lysin family phenol-soluble modulin -
  JMUB898_RS04565 (JMUB898_0923) - 966279..967064 (-) 786 WP_044466870.1 carbon-nitrogen family hydrolase -
  JMUB898_RS04570 (JMUB898_0924) - 967166..967792 (-) 627 WP_044466869.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27833.78 Da        Isoelectric Point: 5.2266

>NTDB_id=70197 JMUB898_RS04540 WP_002445329.1 962740..963456(-) (agrA) [Staphylococcus caprae strain JMUB898]
MKIFVCEDDPRQRENMASIIKNYIMIEEKPMELALATDDPYEVLEQSKEMNDIGCYFLDIQLEADMNGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPSELKTRIIDCLETAHTRLKLLSKESNVETIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELAQLDDRFFRCHNSFVVNRHNIESIDSKERMVYFKNGENCFASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=70197 JMUB898_RS04540 WP_002445329.1 962740..963456(-) (agrA) [Staphylococcus caprae strain JMUB898]
ATGAAGATATTCGTTTGCGAAGACGATCCGAGACAAAGAGAAAATATGGCATCAATTATCAAAAATTATATTATGATTGA
AGAAAAACCGATGGAGTTAGCGCTCGCAACTGATGATCCTTATGAGGTTCTTGAACAATCTAAAGAAATGAATGATATTG
GTTGTTATTTTTTAGATATTCAATTAGAAGCTGATATGAACGGCATCAAATTAGGTAGTGAAATCCGTAAACATGATCCT
GTAGGTAATATTATCTTTGTTACAAGTCATAGTGAACTCACTTATTTAACTTTCGTTTATAAAGTGGCTGCTATGGATTT
TATTTTCAAAGATGACCCTTCAGAGTTAAAGACAAGAATTATTGATTGTCTTGAAACGGCACATACACGCCTTAAATTGT
TATCTAAAGAGAGTAATGTTGAAACAATTGAATTAAAACGTGGTAGTAATTCAGTTTATGTTCAATATGATGATATTATG
TTCTTTGAATCATCTACAAAGTCGCACCGACTCATTGCGCATTTAGATAATCGCCAAATTGAGTTTTATGGTAATTTGAA
AGAATTAGCGCAACTCGATGATCGCTTCTTTAGATGTCACAATAGTTTTGTGGTCAATCGACATAATATTGAATCCATTG
ATTCAAAAGAGCGTATGGTTTACTTCAAAAATGGCGAAAATTGTTTCGCATCCGTACGTAATGTCAAAAAAATCTAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(151-237)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

90.756

100

0.908

Multiple sequence alignment