Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   NIY04_RS17215 Genome accession   NZ_CP099856
Coordinates   3595677..3596003 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain 17978S     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3590677..3601003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NIY04_RS17195 (NIY04_17195) - 3590779..3591408 (-) 630 WP_000219965.1 FHA domain-containing protein -
  NIY04_RS17200 (NIY04_17200) gspD 3591449..3593725 (-) 2277 WP_001196435.1 type II secretion system secretin GspD -
  NIY04_RS17205 (NIY04_17205) - 3593767..3594603 (-) 837 WP_000870030.1 type II secretion system protein N -
  NIY04_RS17210 (NIY04_17210) gspN 3594603..3595346 (-) 744 WP_000730345.1 type II secretion system protein N -
  NIY04_RS17215 (NIY04_17215) hns 3595677..3596003 (-) 327 WP_000801427.1 H-NS histone family protein Regulator
  NIY04_RS17220 (NIY04_17220) - 3596198..3596638 (-) 441 WP_000661569.1 thioesterase family protein -
  NIY04_RS17225 (NIY04_17225) - 3596646..3597839 (-) 1194 WP_000681780.1 membrane protein -
  NIY04_RS17230 (NIY04_17230) - 3597849..3598688 (-) 840 WP_001230201.1 hypothetical protein -
  NIY04_RS17235 (NIY04_17235) - 3598697..3599464 (-) 768 WP_000897412.1 uroporphyrinogen-III synthase -
  NIY04_RS17240 (NIY04_17240) hemC 3599469..3600386 (-) 918 WP_002159654.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=701961 NIY04_RS17215 WP_000801427.1 3595677..3596003(-) (hns) [Acinetobacter baumannii strain 17978S]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=701961 NIY04_RS17215 WP_000801427.1 3595677..3596003(-) (hns) [Acinetobacter baumannii strain 17978S]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAAATTGCTGAAAATGTAGGTTTTAGTGTTGAACAGCTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1