Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   PCP57_RS01245 Genome accession   NZ_CP115287
Coordinates   242052..242777 (+) Length   241 a.a.
NCBI ID   WP_058179254.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain F006     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 237052..247777
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP57_RS01215 (PCP57_01215) - 237172..238050 (-) 879 WP_328993754.1 allophanate hydrolase subunit 1 -
  PCP57_RS01220 (PCP57_01220) - 238052..239428 (-) 1377 WP_033971437.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  PCP57_RS01225 (PCP57_01225) - 239439..239687 (-) 249 WP_003084813.1 acetyl-CoA carboxylase -
  PCP57_RS01230 (PCP57_01230) - 239764..240522 (-) 759 WP_328993757.1 5-oxoprolinase subunit PxpA -
  PCP57_RS01235 (PCP57_01235) - 240640..241566 (+) 927 WP_003118849.1 LysR family transcriptional regulator -
  PCP57_RS01240 (PCP57_01240) - 241620..241913 (+) 294 WP_033971433.1 hypothetical protein -
  PCP57_RS01245 (PCP57_01245) comF 242052..242777 (+) 726 WP_058179254.1 ComF family protein Machinery gene
  PCP57_RS01250 (PCP57_01250) - 242819..243139 (+) 321 WP_057387771.1 YfiM family lipoprotein -
  PCP57_RS01255 (PCP57_01255) - 243207..243965 (+) 759 WP_033971425.1 TOBE domain-containing protein -
  PCP57_RS01260 (PCP57_01260) - 244027..245001 (+) 975 WP_058018283.1 serine/threonine protein kinase -
  PCP57_RS01265 (PCP57_01265) rarD 245208..246104 (+) 897 WP_033971423.1 EamA family transporter RarD -
  PCP57_RS01270 (PCP57_01270) - 246794..247309 (-) 516 WP_003084789.1 glycine cleavage system protein R -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27164.70 Da        Isoelectric Point: 11.0470

>NTDB_id=701949 PCP57_RS01245 WP_058179254.1 242052..242777(+) (comF) [Pseudomonas aeruginosa strain F006]
MSFPLRPLTHWLLPPPACLLCAARSDQPPRPLCRACAADLPWSRQQCRRCALPLPLDGQVCGECLRRPPAYEQAIAPWRY
AFPLDSLINRFKHQAAWPLGRLLGELLAEYLRQRYAEGLPRPARLLPVPLAPRRERRRGFNQAQQLAERLAGELDLRCDP
HSLRRVLDTPAQQGLDATVRRRNLRHAFALAPARDVRGLHLALVDDVLTTGATAERLSRLLRRAGAARVDVYCLARTPKP
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=701949 PCP57_RS01245 WP_058179254.1 242052..242777(+) (comF) [Pseudomonas aeruginosa strain F006]
ATGTCGTTCCCGCTTCGTCCTCTCACACACTGGCTTTTGCCGCCGCCGGCCTGCCTGCTCTGCGCCGCCCGCAGCGACCA
GCCGCCCCGCCCGCTGTGCCGCGCCTGTGCCGCCGACCTGCCATGGTCGCGCCAGCAGTGCCGGCGCTGCGCCCTGCCCC
TGCCGCTGGACGGCCAGGTGTGCGGCGAGTGCCTGCGCCGCCCGCCGGCCTATGAACAGGCGATCGCGCCCTGGCGCTAC
GCCTTTCCGCTCGACAGCCTGATCAACCGCTTCAAGCACCAGGCGGCCTGGCCGTTGGGGCGGCTGCTCGGCGAGCTGCT
GGCGGAATACCTGCGGCAACGCTACGCCGAAGGCCTGCCACGCCCGGCACGCCTGCTGCCGGTCCCGCTGGCGCCACGGC
GCGAACGTCGTCGCGGCTTCAACCAGGCGCAACAGCTCGCCGAGCGACTGGCTGGCGAGCTGGACCTGCGCTGCGATCCG
CACAGCCTGCGGCGAGTGCTGGATACTCCGGCCCAGCAGGGGCTGGACGCGACGGTGCGGCGGCGCAACCTGCGCCACGC
CTTCGCCCTGGCGCCCGCCCGCGATGTTCGCGGGCTGCACCTGGCACTGGTGGACGATGTGCTCACCACCGGAGCCACCG
CCGAGCGCCTTTCCCGCCTGTTGCGCCGGGCGGGCGCCGCGCGGGTCGACGTCTACTGCCTGGCGCGCACGCCGAAGCCC
GGCTGA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(140-238)

Double zinc ribbon domain (DZR_2)

(9-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

38.589

100

0.386
  comFC Legionella pneumophila str. Paris

37.607

97.095

0.365