Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   NIY03_RS01530 Genome accession   NZ_CP099855
Coordinates   321737..322264 (+) Length   175 a.a.
NCBI ID   WP_000695065.1    Uniprot ID   N9K1N5
Organism   Acinetobacter baumannii strain 17978R     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 316737..327264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NIY03_RS01515 (NIY03_01515) pilM 319290..320348 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  NIY03_RS01520 (NIY03_01520) pilN 320348..320989 (+) 642 WP_000201223.1 PilN domain-containing protein Machinery gene
  NIY03_RS01525 (NIY03_01525) pilO 320986..321726 (+) 741 WP_000076102.1 type 4a pilus biogenesis protein PilO Machinery gene
  NIY03_RS01530 (NIY03_01530) pilP 321737..322264 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  NIY03_RS01535 (NIY03_01535) pilQ 322332..324497 (+) 2166 WP_001017031.1 type IV pilus secretin PilQ Machinery gene
  NIY03_RS01540 (NIY03_01540) aroK 324509..325078 (+) 570 WP_000643712.1 shikimate kinase AroK -
  NIY03_RS01545 (NIY03_01545) aroB 325107..326189 (+) 1083 WP_001193998.1 3-dehydroquinate synthase -
  NIY03_RS01550 (NIY03_01550) - 326205..327080 (+) 876 WP_000218805.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19419.64 Da        Isoelectric Point: 8.9898

>NTDB_id=701883 NIY03_RS01530 WP_000695065.1 321737..322264(+) (pilP) [Acinetobacter baumannii strain 17978R]
MKIKQITLYVLACAVLVGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=701883 NIY03_RS01530 WP_000695065.1 321737..322264(+) (pilP) [Acinetobacter baumannii strain 17978R]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCGTGTGCTGTGCTTGTCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCACAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTAGCTGCCGAGCTCAAGATTATGGCTGGGAAACGG
GTTTATCCGAATTTCTCACGTGCGCCCCAACCACTCGAAAGTTATGCACTTGAAGCTTTAAATATGAAAGGGAGCATGCG
TAATAATCGAGGGCAGATATTGGCCTTGATCCAGACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GTATGAATCAGGGCCGTATTACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCAGATGGTCGAGAAGGC
TATGTCGAAAGACCAAGAACATTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1N5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

100

100

1
  comL Acinetobacter baylyi ADP1

71.839

99.429

0.714