Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NDO72_RS16670 Genome accession   NZ_CP099834
Coordinates   3426083..3426679 (-) Length   198 a.a.
NCBI ID   WP_023289053.1    Uniprot ID   A0A2N4W2M8
Organism   Klebsiella quasipneumoniae strain Y7-3     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3421083..3431679
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDO72_RS16655 (NDO72_16655) helD 3421294..3423348 (-) 2055 WP_253230711.1 DNA helicase IV -
  NDO72_RS16660 (NDO72_16660) - 3423473..3423919 (+) 447 WP_004201437.1 YccF domain-containing protein -
  NDO72_RS16665 (NDO72_16665) yccS 3423937..3426072 (+) 2136 WP_253230712.1 YccS family putative transporter -
  NDO72_RS16670 (NDO72_16670) sxy/tfoX 3426083..3426679 (-) 597 WP_023289053.1 TfoX/Sxy family DNA transformation protein Regulator
  NDO72_RS16675 (NDO72_16675) - 3426697..3427002 (-) 306 WP_158238131.1 hypothetical protein -
  NDO72_RS16680 (NDO72_16680) sulA 3427028..3427537 (+) 510 WP_023289052.1 SOS-induced cell division inhibitor SulA -
  NDO72_RS16685 (NDO72_16685) ompA 3427890..3428960 (+) 1071 WP_044521956.1 porin OmpA -
  NDO72_RS16690 (NDO72_16690) matP 3429107..3429559 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  NDO72_RS16695 (NDO72_16695) - 3429745..3431502 (+) 1758 WP_101990756.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22670.34 Da        Isoelectric Point: 10.2333

>NTDB_id=701864 NDO72_RS16670 WP_023289053.1 3426083..3426679(-) (sxy/tfoX) [Klebsiella quasipneumoniae strain Y7-3]
MRKLVCPRLPQFQACVSPLGQLHSRPLFGGYSLAIEDTVFAMVAEGNIYLKACEQSAAYRVEHHNPLLMLRRHGRIVPLK
YYQIDDALWRDEKQLFRLSLMSWQSAQREKYRRRSSGRLKDLPNISFHMELQLIHSGIPDVLALREVGARQAWLKLRENN
ASLSHNVLLALEGAIVGVHAAALPTPRRQELLEWASAR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=701864 NDO72_RS16670 WP_023289053.1 3426083..3426679(-) (sxy/tfoX) [Klebsiella quasipneumoniae strain Y7-3]
ATGAGAAAACTCGTATGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCTCCGCTGGGTCAACTTCACTCTCGCCCCCT
GTTTGGCGGCTACAGCCTGGCTATCGAAGATACCGTGTTTGCGATGGTGGCAGAGGGGAATATTTATCTAAAGGCCTGCG
AGCAGAGCGCTGCCTATCGGGTAGAACACCATAATCCTTTATTGATGCTGCGCCGACACGGGCGCATCGTGCCGCTAAAG
TATTATCAAATCGACGATGCCTTGTGGCGCGATGAGAAACAGCTTTTCCGCTTGTCGCTGATGTCGTGGCAGAGCGCCCA
GCGTGAAAAATATCGCCGCCGGTCGTCGGGACGCCTGAAGGATTTACCCAATATCAGCTTTCACATGGAATTGCAGCTGA
TTCACTCGGGCATTCCAGACGTGTTAGCACTACGGGAGGTGGGCGCCCGCCAGGCCTGGCTAAAGCTGCGCGAGAACAAT
GCTTCTCTATCGCACAACGTCTTGCTGGCGCTGGAGGGGGCTATCGTTGGCGTTCATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTGGAATGGGCGTCTGCGCGCTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(16-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N4W2M8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

49.746

99.495

0.495