Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   PCP32_RS08930 Genome accession   NZ_CP115285
Coordinates   1909312..1909908 (-) Length   198 a.a.
NCBI ID   WP_058152780.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain F007     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1904312..1914908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP32_RS08905 (PCP32_08900) - 1904706..1904855 (-) 150 Protein_1770 hypothetical protein -
  PCP32_RS08910 (PCP32_08905) - 1904948..1906531 (+) 1584 WP_023436051.1 flavin-containing monooxygenase -
  PCP32_RS08915 (PCP32_08910) - 1906528..1907415 (+) 888 WP_003087246.1 SDR family NAD(P)-dependent oxidoreductase -
  PCP32_RS08920 (PCP32_08915) - 1907489..1908028 (+) 540 WP_031636338.1 CbrC family protein -
  PCP32_RS08925 (PCP32_08920) - 1908041..1909189 (-) 1149 WP_003111078.1 acyl-CoA dehydrogenase family protein -
  PCP32_RS08930 (PCP32_08925) recR 1909312..1909908 (-) 597 WP_058152780.1 recombination mediator RecR Machinery gene
  PCP32_RS08935 (PCP32_08930) - 1909987..1910313 (-) 327 WP_003087236.1 YbaB/EbfC family nucleoid-associated protein -
  PCP32_RS08940 (PCP32_08935) dnaX 1910359..1912443 (-) 2085 WP_058152781.1 DNA polymerase III subunit gamma/tau -
  PCP32_RS08945 (PCP32_08940) - 1912480..1913346 (+) 867 WP_079743869.1 substrate-binding periplasmic protein -
  PCP32_RS08955 (PCP32_08950) - 1913600..1913977 (-) 378 WP_003083354.1 hypothetical protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21115.39 Da        Isoelectric Point: 6.3314

>NTDB_id=701863 PCP32_RS08930 WP_058152780.1 1909312..1909908(-) (recR) [Pseudomonas aeruginosa strain F007]
MSFSPLIRQLIESLRILPGVGQKSAQRMALMLLERDRSGGLKLAQALTAAMEGVGHCRQCRTLSEEALCPQCADPRRDDS
LLCVVEGPLDVFAVEQTGYRGRYFVLKGHLSPLDGLGPEAIGIPELEARIRDGAFSEVILATNPTVEGEATAHYIAQLLA
GRGLTLSRIAHGVPLGGELELVDGGTLAHALAGRRPIS

Nucleotide


Download         Length: 597 bp        

>NTDB_id=701863 PCP32_RS08930 WP_058152780.1 1909312..1909908(-) (recR) [Pseudomonas aeruginosa strain F007]
ATGAGTTTCAGCCCGCTGATCCGCCAACTGATCGAGTCCCTGCGCATTCTTCCCGGTGTCGGGCAGAAGTCGGCCCAGCG
CATGGCGCTGATGCTGCTGGAGCGCGATCGCAGCGGCGGCCTGAAGCTGGCCCAGGCGTTGACCGCCGCGATGGAAGGGG
TCGGTCATTGCCGGCAGTGCCGTACCCTCAGCGAGGAGGCGCTGTGCCCGCAGTGCGCCGACCCGCGACGCGACGACTCG
CTGCTCTGCGTGGTGGAAGGCCCGCTGGACGTATTCGCGGTGGAGCAGACCGGCTACCGCGGCCGCTACTTCGTGCTCAA
GGGACACCTGTCGCCGCTCGACGGCCTGGGGCCGGAGGCGATCGGCATTCCCGAACTGGAAGCGCGGATCAGGGACGGAG
CCTTCAGCGAGGTGATCCTCGCCACCAACCCCACCGTGGAAGGCGAGGCCACCGCCCACTATATCGCCCAGCTACTGGCC
GGCCGCGGCCTGACCTTGTCGCGTATCGCCCATGGCGTGCCGCTGGGCGGCGAGCTGGAACTGGTCGATGGCGGCACCTT
GGCCCACGCCCTGGCCGGACGGCGGCCGATCTCCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-170)

RecR protein (RecR_ZnF)

(41-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

47.739

100

0.48
  recR Bacillus subtilis subsp. subtilis str. 168

48.469

98.99

0.48