Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   PCP32_RS05195 Genome accession   NZ_CP115285
Coordinates   1104035..1104649 (+) Length   204 a.a.
NCBI ID   WP_003091196.1    Uniprot ID   Q02PH1
Organism   Pseudomonas aeruginosa strain F007     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1099035..1109649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP32_RS05175 (PCP32_05180) - 1099613..1101034 (-) 1422 WP_058152841.1 IS1182 family transposase -
  PCP32_RS05180 (PCP32_05185) - 1101146..1101883 (-) 738 WP_023104550.1 S-methyl-5'-thioinosine phosphorylase -
  PCP32_RS05185 (PCP32_05190) nagZ 1101895..1102893 (-) 999 WP_058152286.1 beta-N-acetylhexosaminidase -
  PCP32_RS05190 (PCP32_05195) psrA 1103102..1103803 (-) 702 WP_003091195.1 transcriptional regulator PsrA -
  PCP32_RS05195 (PCP32_05200) dinR/lexA 1104035..1104649 (+) 615 WP_003091196.1 transcriptional repressor LexA Regulator
  PCP32_RS05200 (PCP32_05205) sulA 1104661..1105146 (+) 486 WP_003091197.1 SOS-induced cell division inhibitor SulA -
  PCP32_RS05205 (PCP32_05210) - 1105168..1105401 (-) 234 WP_003109483.1 hypothetical protein -
  PCP32_RS05210 (PCP32_05215) - 1105607..1106125 (-) 519 WP_003091199.1 DUF6586 family protein -
  PCP32_RS05215 (PCP32_05220) topA 1106232..1108838 (-) 2607 WP_003091201.1 type I DNA topoisomerase -
  PCP32_RS05220 (PCP32_05225) - 1108929..1109192 (-) 264 WP_058152285.1 DUF1653 domain-containing protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22505.95 Da        Isoelectric Point: 6.4989

>NTDB_id=701857 PCP32_RS05195 WP_003091196.1 1104035..1104649(+) (dinR/lexA) [Pseudomonas aeruginosa strain F007]
MQKLTPRQAEILSFIKRCLEDHGFPPTRAEIAQELGFKSPNAAEEHLKALARKGAIEMTPGASRGIRIPGFEPHAANDDE
GLPVIGRVAAGAPILAEQNIEESCRINPAFFNPRADYLLRVRGMSMKDIGILDGDLLAVHVTREARNGQVVVARIGEEVT
VKRFKREGSKVWLLAENPEFAPIEVDLKEQELIIEGLSVGVIRR

Nucleotide


Download         Length: 615 bp        

>NTDB_id=701857 PCP32_RS05195 WP_003091196.1 1104035..1104649(+) (dinR/lexA) [Pseudomonas aeruginosa strain F007]
ATGCAGAAGCTGACGCCCCGCCAAGCCGAGATCCTCTCCTTCATCAAGCGCTGCCTGGAAGACCACGGCTTTCCGCCGAC
CCGGGCGGAAATCGCCCAGGAACTCGGCTTCAAGTCGCCGAACGCCGCCGAGGAGCACCTCAAGGCGCTGGCACGCAAGG
GCGCCATCGAAATGACTCCGGGCGCCTCTCGCGGCATCCGCATTCCCGGCTTCGAACCGCATGCCGCCAACGACGATGAG
GGCCTGCCGGTGATCGGACGGGTCGCCGCCGGCGCACCGATCCTCGCCGAACAGAACATCGAGGAATCCTGCCGGATCAA
TCCCGCCTTCTTCAATCCTCGCGCCGACTACCTGTTGCGCGTGCGCGGCATGAGCATGAAGGACATCGGCATCCTCGACG
GCGACCTGCTGGCCGTCCACGTCACCCGCGAAGCGCGCAACGGCCAGGTGGTGGTCGCGCGGATCGGCGAGGAGGTCACG
GTGAAACGCTTCAAGCGCGAAGGCAGCAAGGTCTGGCTGCTGGCGGAAAACCCTGAGTTCGCTCCGATCGAAGTCGATCT
GAAGGAGCAGGAACTGATCATCGAAGGCTTGAGCGTCGGCGTGATCCGACGCTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(1-65)

Peptidase S24-like (Peptidase_S24)

(83-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02PH1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

38.35

100

0.387