Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilZ   Type   Machinery gene
Locus tag   PCP32_RS04950 Genome accession   NZ_CP115285
Coordinates   1054223..1054579 (-) Length   118 a.a.
NCBI ID   WP_003091119.1    Uniprot ID   A0A0H2ZD30
Organism   Pseudomonas aeruginosa strain F007     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1049223..1059579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP32_RS04925 (PCP32_04930) - 1049589..1050221 (-) 633 WP_003091112.1 DUF4823 domain-containing protein -
  PCP32_RS04930 (PCP32_04935) - 1050286..1051182 (-) 897 WP_003091113.1 radical SAM protein -
  PCP32_RS04935 (PCP32_04940) - 1051349..1051987 (-) 639 WP_023091594.1 TetR/AcrR family transcriptional regulator -
  PCP32_RS04940 (PCP32_04945) - 1052073..1053206 (+) 1134 WP_329032904.1 aminotransferase class V-fold PLP-dependent enzyme -
  PCP32_RS04945 (PCP32_04950) - 1053432..1054208 (-) 777 WP_023106225.1 TatD family hydrolase -
  PCP32_RS04950 (PCP32_04955) pilZ 1054223..1054579 (-) 357 WP_003091119.1 PilZ domain-containing protein Machinery gene
  PCP32_RS04955 (PCP32_04960) - 1054613..1055599 (-) 987 WP_023875119.1 DNA polymerase III subunit delta' -
  PCP32_RS04960 (PCP32_04965) tmk 1055592..1056224 (-) 633 WP_034024849.1 dTMP kinase -
  PCP32_RS04965 (PCP32_04970) mltG 1056253..1057302 (-) 1050 WP_003104128.1 endolytic transglycosylase MltG -
  PCP32_RS04970 (PCP32_04975) pabC 1057308..1058123 (-) 816 WP_034024846.1 aminodeoxychorismate lyase -
  PCP32_RS04975 (PCP32_04980) fabF 1058123..1059367 (-) 1245 WP_003104132.1 beta-ketoacyl-ACP synthase II -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 12903.98 Da        Isoelectric Point: 9.9969

>NTDB_id=701854 PCP32_RS04950 WP_003091119.1 1054223..1054579(-) (pilZ) [Pseudomonas aeruginosa strain F007]
MSLPPNLGPRNGILSLTIKDKSVLYAAYMPFIRNGGLFIPTNKNYKLGDEVFMLLNLMEEPEKIPVAGKVVWITPKGAQG
NRAAGIGVQFNDGDNTARNKIETYLAGALKSDRPTHTM

Nucleotide


Download         Length: 357 bp        

>NTDB_id=701854 PCP32_RS04950 WP_003091119.1 1054223..1054579(-) (pilZ) [Pseudomonas aeruginosa strain F007]
ATGAGTTTGCCACCCAATCTGGGGCCGCGTAACGGCATCCTGTCCTTGACCATCAAGGACAAGTCCGTGCTGTACGCCGC
CTACATGCCGTTCATCAGGAACGGCGGGCTGTTCATTCCCACCAACAAGAACTACAAGCTCGGCGACGAGGTCTTCATGC
TGCTCAACCTGATGGAAGAGCCGGAGAAGATCCCGGTGGCCGGCAAGGTCGTCTGGATCACCCCGAAGGGCGCCCAGGGC
AACCGTGCGGCGGGCATCGGCGTGCAGTTCAACGACGGTGACAACACCGCCCGCAACAAGATCGAAACCTACCTGGCCGG
GGCGCTGAAGTCGGACCGGCCGACCCACACGATGTAA

Domains

Predicted by InterProScan.

PilZ domain (PilZ)

(17-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZD30

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilZ Legionella pneumophila str. Paris

49.074

91.525

0.449
  pilZ Legionella pneumophila strain ERS1305867

49.074

91.525

0.449