Detailed information NTG0701826

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PCP30_RS27795
• Genome accession: NZ_CP115284
• Coordinates: 5933516..5934520 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain F008
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 5928516..5939520

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PCP30_RS27765 (PCP30_27770)	fghA	5928608..5929459 (+)	852	WP_003092349.1	S-formylglutathione hydrolase	-
PCP30_RS27770 (PCP30_27775)	ispF	5929530..5930003 (+)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PCP30_RS27775 (PCP30_27780)	truD	5930000..5931067 (+)	1068	WP_003092343.1	tRNA pseudouridine(13) synthase TruD	-
PCP30_RS27780 (PCP30_27785)	surE	5931055..5931804 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
PCP30_RS27785 (PCP30_27790)	-	5931837..5932472 (+)	636	WP_073660134.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PCP30_RS27790 (PCP30_27795)	-	5932518..5933411 (+)	894	WP_003092335.1	peptidoglycan DD-metalloendopeptidase family protein	-
PCP30_RS27795 (PCP30_27800)	rpoS	5933516..5934520 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PCP30_RS27800 (PCP30_27805)	-	5934745..5935944 (+)	1200	WP_003111696.1	tyrosine-type recombinase/integrase	-
PCP30_RS27805 (PCP30_27810)	-	5935941..5937005 (+)	1065	WP_020750775.1	PDDEXK nuclease domain-containing protein	-
PCP30_RS27810 (PCP30_27815)	-	5937358..5937750 (+)	393	WP_003111694.1	hypothetical protein	-
PCP30_RS27815 (PCP30_27820)	-	5937834..5938091 (+)	258	WP_003111693.1	metal-sensing transcriptional repressor	-
PCP30_RS27820 (PCP30_27825)	-	5938101..5939411 (+)	1311	WP_003111692.1	MFS transporter	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=701826 PCP30_RS27795 WP_003113871.1 5933516..5934520(+) (rpoS) [Pseudomonas aeruginosa strain F008]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=701826 PCP30_RS27795 WP_003113871.1 5933516..5934520(+) (rpoS) [Pseudomonas aeruginosa strain F008]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTTAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653