Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   M2Y57_RS06660 Genome accession   NZ_AP023345
Coordinates   1405341..1405808 (+) Length   155 a.a.
NCBI ID   WP_021300980.1    Uniprot ID   -
Organism   Helicobacter pylori strain JSHR31     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1400341..1410808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2Y57_RS06640 (JSHR31_13160) grpE 1400490..1401065 (+) 576 WP_248425850.1 nucleotide exchange factor GrpE -
  M2Y57_RS06645 (JSHR31_13170) dnaK 1401096..1402958 (+) 1863 WP_029567819.1 molecular chaperone DnaK -
  M2Y57_RS06650 (JSHR31_13180) - 1403213..1404130 (+) 918 WP_248425853.1 PLP-dependent cysteine synthase family protein -
  M2Y57_RS06655 (JSHR31_13190) - 1404164..1405306 (+) 1143 WP_248425855.1 cystathionine gamma-synthase -
  M2Y57_RS06660 (JSHR31_13200) luxS 1405341..1405808 (+) 468 WP_021300980.1 S-ribosylhomocysteine lyase Regulator
  M2Y57_RS06665 (JSHR31_13210) - 1405998..1407683 (+) 1686 WP_345893271.1 5'-nucleotidase C-terminal domain-containing protein -
  M2Y57_RS06670 (JSHR31_13220) tlpB 1407901..1409598 (+) 1698 WP_248425857.1 methyl-accepting chemotaxis protein -
  M2Y57_RS06675 (JSHR31_13230) - 1409629..1410411 (+) 783 WP_154512918.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17661.16 Da        Isoelectric Point: 6.8403

>NTDB_id=70176 M2Y57_RS06660 WP_021300980.1 1405341..1405808(+) (luxS) [Helicobacter pylori strain JSHR31]
MKTPKMNVESFNLDHTKVKAPYVRIADRKKGVNGDLIVKYDVRLKQPNKDHMDMPSLHSLEHLVAEIIRNHANYVVDWSP
MGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKATEVPASNEKQCGWAANHTLEGAQNLARAFLDKRAEWSEVGV

Nucleotide


Download         Length: 468 bp        

>NTDB_id=70176 M2Y57_RS06660 WP_021300980.1 1405341..1405808(+) (luxS) [Helicobacter pylori strain JSHR31]
ATGAAAACGCCAAAAATGAATGTAGAGAGTTTTAATTTGGATCACACCAAAGTCAAAGCCCCTTATGTGCGTATCGCTGA
TCGCAAAAAGGGCGTTAATGGGGATTTGATTGTCAAATACGATGTGCGCCTCAAACAGCCCAACAAAGATCACATGGACA
TGCCAAGCTTGCACTCTTTAGAGCATTTAGTCGCTGAGATTATCCGCAACCATGCCAATTATGTTGTGGATTGGTCGCCT
ATGGGTTGCCAAACGGGATTTTATCTCACGGTGTTAAACCATGACAATTACACAGAGATTTTAGAGGTTTTAGAAAAGAC
GATGCAAGATGTGCTAAAGGCTACAGAAGTGCCTGCCAGCAATGAAAAGCAATGCGGTTGGGCGGCTAACCACACTTTAG
AGGGCGCGCAGAATTTAGCGCGCGCTTTTTTAGACAAACGCGCTGAGTGGTCTGAAGTGGGGGTTTGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(7-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

41.135

90.968

0.374