Detailed information
Bioinformatically predicted
Overview
| Name | comGB | Type | Machinery gene |
| Locus tag | EL289_RS06730 | Genome accession | NZ_AP018586 |
| Coordinates | 1394058..1395125 (+) | Length | 355 a.a. |
| NCBI ID | WP_049402080.1 | Uniprot ID | - |
| Organism | Staphylococcus caprae strain JMUB590 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1389058..1400125
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL289_RS06700 (JMUB590_1346) | - | 1389477..1390940 (+) | 1464 | WP_044466727.1 | rhomboid family protein | - |
| EL289_RS06705 (JMUB590_1347) | - | 1390921..1391124 (+) | 204 | WP_002443096.1 | YqgQ family protein | - |
| EL289_RS06710 (JMUB590_1348) | - | 1391121..1392107 (+) | 987 | WP_002443095.1 | ROK family glucokinase | - |
| EL289_RS06715 (JMUB590_1349) | - | 1392107..1392430 (+) | 324 | WP_002443093.1 | MTH1187 family thiamine-binding protein | - |
| EL289_RS06720 (JMUB590_1350) | - | 1392434..1393057 (+) | 624 | WP_002443090.1 | MBL fold metallo-hydrolase | - |
| EL289_RS06725 (JMUB590_1351) | comGA | 1393112..1394086 (+) | 975 | WP_002443088.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| EL289_RS06730 (JMUB590_1352) | comGB | 1394058..1395125 (+) | 1068 | WP_049402080.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| EL289_RS06735 (JMUB590_1353) | comGC | 1395139..1395456 (+) | 318 | WP_002443081.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| EL289_RS12940 (JMUB590_1354) | comGD | 1395485..1395883 (+) | 399 | WP_002443080.1 | competence type IV pilus minor pilin ComGD | - |
| EL289_RS06745 (JMUB590_1355) | - | 1395870..1396163 (+) | 294 | WP_002443078.1 | hypothetical protein | - |
| EL289_RS06750 (JMUB590_1356) | - | 1396150..1396578 (+) | 429 | WP_232018998.1 | competence type IV pilus minor pilin ComGF | - |
| EL289_RS06760 (JMUB590_1357) | - | 1396747..1397256 (+) | 510 | WP_002443074.1 | shikimate kinase | - |
| EL289_RS06765 (JMUB590_1358) | gcvT | 1397482..1398573 (+) | 1092 | WP_002443072.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| EL289_RS06770 (JMUB590_1359) | gcvPA | 1398591..1399937 (+) | 1347 | WP_002443070.1 | aminomethyl-transferring glycine dehydrogenase subunit GcvPA | - |
Sequence
Protein
Download Length: 355 a.a. Molecular weight: 41864.99 Da Isoelectric Point: 9.8952
>NTDB_id=70173 EL289_RS06730 WP_049402080.1 1394058..1395125(+) (comGB) [Staphylococcus caprae strain JMUB590]
MKRLSTNIFKFKKRKNLTEPQLIELLQRLNQLLQNGFTLFESFSFLNLHFPYKNKTIGQNIIESLQTGATCYEILKIIGY
PEIILNQIKFAEQYGKLENVITDSIDYMKRNYKAKKALIKTIQYPIVLISIFLVMLIVLNMTVIPQFQQLYSTMNVELST
FQNILTFIITKLPNFLFLFLMLSMIIYFSFITLLNKLPIDKKIDYILKIPILNSYYKIYRTYQFSNELSLFYKNGVSLQS
IVFIYQNEQNNEFFKYLGSQLLEGADNGRTLPLILKNLKCFKNDLIKFIEQGEKSGKLDIELKLYSQMLLQHFEDKVIKQ
TKLIQPVIFFILGLFIVSLYLVIMLPMFELMQTIK
MKRLSTNIFKFKKRKNLTEPQLIELLQRLNQLLQNGFTLFESFSFLNLHFPYKNKTIGQNIIESLQTGATCYEILKIIGY
PEIILNQIKFAEQYGKLENVITDSIDYMKRNYKAKKALIKTIQYPIVLISIFLVMLIVLNMTVIPQFQQLYSTMNVELST
FQNILTFIITKLPNFLFLFLMLSMIIYFSFITLLNKLPIDKKIDYILKIPILNSYYKIYRTYQFSNELSLFYKNGVSLQS
IVFIYQNEQNNEFFKYLGSQLLEGADNGRTLPLILKNLKCFKNDLIKFIEQGEKSGKLDIELKLYSQMLLQHFEDKVIKQ
TKLIQPVIFFILGLFIVSLYLVIMLPMFELMQTIK
Nucleotide
Download Length: 1068 bp
>NTDB_id=70173 EL289_RS06730 WP_049402080.1 1394058..1395125(+) (comGB) [Staphylococcus caprae strain JMUB590]
GTGAAGAGATTGTCGACAAATATATTTAAATTTAAAAAGCGAAAAAATCTTACCGAGCCTCAGTTAATTGAATTACTTCA
ACGACTTAATCAATTATTACAAAATGGCTTTACTTTATTTGAAAGTTTCAGCTTTCTAAATTTACACTTCCCTTATAAAA
ATAAAACGATAGGTCAAAATATCATTGAATCATTACAAACAGGCGCAACATGTTATGAAATTTTAAAAATAATAGGCTAT
CCTGAAATTATTCTTAATCAAATTAAATTCGCAGAACAATATGGAAAACTTGAGAATGTGATAACAGATTCAATTGATTA
TATGAAGAGGAATTATAAAGCTAAAAAAGCACTCATTAAAACCATACAATATCCCATAGTATTAATTAGCATCTTCCTAG
TGATGCTTATCGTTTTGAATATGACAGTTATTCCACAGTTCCAACAATTATATTCTACGATGAATGTAGAATTATCTACC
TTTCAAAATATACTTACTTTTATCATAACGAAACTTCCAAATTTTTTATTTCTATTTCTAATGTTATCAATGATCATTTA
CTTTTCATTCATCACACTTTTAAATAAATTACCCATTGATAAAAAAATAGATTACATCCTCAAAATTCCAATTTTAAACT
CTTATTACAAAATATATAGAACTTATCAATTTTCCAATGAACTTTCATTATTCTATAAAAACGGTGTTAGTCTTCAAAGC
ATCGTCTTTATCTATCAAAATGAACAAAACAACGAATTCTTTAAATACTTGGGAAGTCAATTATTAGAAGGAGCTGATAA
CGGAAGAACACTTCCGCTTATATTAAAAAATTTAAAGTGCTTTAAAAATGATTTAATAAAATTTATCGAGCAAGGAGAAA
AAAGTGGAAAGTTAGATATAGAGCTTAAATTATATAGTCAAATGCTATTGCAACATTTTGAAGATAAAGTCATAAAACAA
ACAAAATTGATCCAACCAGTTATTTTCTTTATTTTAGGCTTGTTTATTGTGTCTTTATATCTCGTCATCATGCTACCTAT
GTTTGAACTTATGCAAACGATTAAGTAA
GTGAAGAGATTGTCGACAAATATATTTAAATTTAAAAAGCGAAAAAATCTTACCGAGCCTCAGTTAATTGAATTACTTCA
ACGACTTAATCAATTATTACAAAATGGCTTTACTTTATTTGAAAGTTTCAGCTTTCTAAATTTACACTTCCCTTATAAAA
ATAAAACGATAGGTCAAAATATCATTGAATCATTACAAACAGGCGCAACATGTTATGAAATTTTAAAAATAATAGGCTAT
CCTGAAATTATTCTTAATCAAATTAAATTCGCAGAACAATATGGAAAACTTGAGAATGTGATAACAGATTCAATTGATTA
TATGAAGAGGAATTATAAAGCTAAAAAAGCACTCATTAAAACCATACAATATCCCATAGTATTAATTAGCATCTTCCTAG
TGATGCTTATCGTTTTGAATATGACAGTTATTCCACAGTTCCAACAATTATATTCTACGATGAATGTAGAATTATCTACC
TTTCAAAATATACTTACTTTTATCATAACGAAACTTCCAAATTTTTTATTTCTATTTCTAATGTTATCAATGATCATTTA
CTTTTCATTCATCACACTTTTAAATAAATTACCCATTGATAAAAAAATAGATTACATCCTCAAAATTCCAATTTTAAACT
CTTATTACAAAATATATAGAACTTATCAATTTTCCAATGAACTTTCATTATTCTATAAAAACGGTGTTAGTCTTCAAAGC
ATCGTCTTTATCTATCAAAATGAACAAAACAACGAATTCTTTAAATACTTGGGAAGTCAATTATTAGAAGGAGCTGATAA
CGGAAGAACACTTCCGCTTATATTAAAAAATTTAAAGTGCTTTAAAAATGATTTAATAAAATTTATCGAGCAAGGAGAAA
AAAGTGGAAAGTTAGATATAGAGCTTAAATTATATAGTCAAATGCTATTGCAACATTTTGAAGATAAAGTCATAAAACAA
ACAAAATTGATCCAACCAGTTATTTTCTTTATTTTAGGCTTGTTTATTGTGTCTTTATATCTCGTCATCATGCTACCTAT
GTTTGAACTTATGCAAACGATTAAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGB | Staphylococcus aureus MW2 |
49.157 |
100 |
0.493 |
| comGB | Staphylococcus aureus N315 |
49.157 |
100 |
0.493 |