Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | M2Y57_RS06250 | Genome accession | NZ_AP023345 |
| Coordinates | 1317658..1318893 (-) | Length | 411 a.a. |
| NCBI ID | WP_248425797.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain JSHR31 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1312658..1323893
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M2Y57_RS06210 (JSHR31_12230) | - | 1312779..1314506 (-) | 1728 | WP_248425792.1 | type IV secretory system conjugative DNA transfer family protein | - |
| M2Y57_RS06215 (JSHR31_12240) | - | 1314507..1315064 (-) | 558 | WP_248425793.1 | hypothetical protein | - |
| M2Y57_RS06220 (JSHR31_12250) | - | 1315065..1315355 (-) | 291 | WP_248425794.1 | hypothetical protein | - |
| M2Y57_RS06225 (JSHR31_12260) | - | 1315352..1315807 (-) | 456 | WP_248425795.1 | mobilization protein | - |
| M2Y57_RS06230 (JSHR31_12270) | - | 1315804..1316744 (-) | 941 | Protein_1218 | CpaF/VirB11 family protein | - |
| M2Y57_RS06235 (JSHR31_12280) | - | 1316744..1317042 (-) | 299 | Protein_1219 | hypothetical protein | - |
| M2Y57_RS06240 (JSHR31_12290) | - | 1317039..1317302 (-) | 264 | WP_245025044.1 | hypothetical protein | - |
| M2Y57_RS06245 (JSHR31_12300) | - | 1317295..1317588 (-) | 294 | WP_000671329.1 | hypothetical protein | - |
| M2Y57_RS06250 (JSHR31_12310) | comB10 | 1317658..1318893 (-) | 1236 | WP_248425797.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| M2Y57_RS06255 (JSHR31_12320) | - | 1318890..1320431 (-) | 1542 | WP_248425798.1 | TrbG/VirB9 family P-type conjugative transfer protein | - |
| M2Y57_RS06260 (JSHR31_12340) | - | 1320431..1321416 (-) | 986 | Protein_1224 | type IV secretion system protein | - |
| M2Y57_RS07710 (JSHR31_12350) | - | 1321418..1321546 (-) | 129 | WP_001185489.1 | hypothetical protein | - |
| M2Y57_RS06265 (JSHR31_12360) | - | 1321546..1323479 (-) | 1934 | Protein_1226 | type IA DNA topoisomerase | - |
Sequence
Protein
Download Length: 411 a.a. Molecular weight: 46501.58 Da Isoelectric Point: 9.9785
>NTDB_id=70173 M2Y57_RS06250 WP_248425797.1 1317658..1318893(-) (comB10) [Helicobacter pylori strain JSHR31]
MKKLLLLLDHKIIKIGLIIVIVLVGFFLFYEQEIKEKAVNVSQGKFPTSSYLFQAYEGIKNKIDTINEVKPNDEAKSVNE
NIEKTQKDLDDFNALVQKLPNLPKDFNKTLIKPQNPSFNYNTANEEEKTRLVILASRISSQKETQPPTSIKNSVSNTKYK
EKQELEKEYGSSGFKNFKRKNVASSENKLLRTITADRMIPAILITPISSEIGGSKIVAQVESDIYATMGRAVLIPKGSRA
IGYYNSNNKIGEYRLEIAWNRIITPQGVNIILSDAKGADVKGYNGMIGTLHNKYWERYGIPLSLSTLSNGLLIGLTSGLT
EAMKNKKGGFNQNYFGDYMMMQMTRQTGISLNNIIAQIMREQIRIKPIITIREGSHIFISPNTDIWFPIPKNNEVLAKFF
NEEKEQNNDTK
MKKLLLLLDHKIIKIGLIIVIVLVGFFLFYEQEIKEKAVNVSQGKFPTSSYLFQAYEGIKNKIDTINEVKPNDEAKSVNE
NIEKTQKDLDDFNALVQKLPNLPKDFNKTLIKPQNPSFNYNTANEEEKTRLVILASRISSQKETQPPTSIKNSVSNTKYK
EKQELEKEYGSSGFKNFKRKNVASSENKLLRTITADRMIPAILITPISSEIGGSKIVAQVESDIYATMGRAVLIPKGSRA
IGYYNSNNKIGEYRLEIAWNRIITPQGVNIILSDAKGADVKGYNGMIGTLHNKYWERYGIPLSLSTLSNGLLIGLTSGLT
EAMKNKKGGFNQNYFGDYMMMQMTRQTGISLNNIIAQIMREQIRIKPIITIREGSHIFISPNTDIWFPIPKNNEVLAKFF
NEEKEQNNDTK
Nucleotide
Download Length: 1236 bp
>NTDB_id=70173 M2Y57_RS06250 WP_248425797.1 1317658..1318893(-) (comB10) [Helicobacter pylori strain JSHR31]
ATGAAAAAACTTCTTTTACTTTTAGATCATAAAATCATAAAAATTGGCTTAATTATTGTGATTGTATTAGTTGGTTTTTT
TCTTTTTTACGAACAAGAAATCAAAGAAAAAGCTGTTAATGTTTCTCAAGGTAAATTCCCTACTTCATCTTATTTGTTTC
AAGCTTACGAAGGCATTAAGAATAAAATAGATACTATCAATGAAGTGAAACCAAACGATGAAGCTAAAAGCGTTAATGAG
AATATAGAAAAAACACAAAAAGATTTAGATGACTTTAATGCACTAGTGCAAAAATTACCAAATTTGCCTAAGGATTTTAA
TAAAACGCTTATTAAACCACAAAATCCATCCTTCAACTACAATACCGCTAACGAAGAAGAAAAAACCCGCCTTGTGATTT
TAGCGTCTCGTATTAGCAGCCAAAAAGAAACGCAGCCTCCAACCTCTATAAAAAATAGTGTTTCTAATACAAAATATAAA
GAAAAACAAGAACTTGAAAAAGAATACGGCTCTAGCGGTTTTAAAAATTTTAAAAGAAAAAATGTAGCGAGCAGTGAAAA
CAAACTTTTGAGAACGATTACAGCTGACAGAATGATCCCAGCCATTCTGATCACTCCTATTAGTAGTGAAATAGGGGGGA
GTAAGATAGTCGCTCAAGTGGAGAGTGATATATACGCAACAATGGGTAGAGCGGTTTTAATCCCTAAAGGGAGTAGAGCC
ATAGGCTATTACAACTCTAATAACAAAATAGGAGAATACCGCTTAGAAATTGCTTGGAATAGGATAATCACGCCACAAGG
GGTCAATATCATACTAAGCGATGCTAAGGGAGCTGATGTCAAGGGCTATAACGGCATGATAGGCACACTCCATAACAAAT
ATTGGGAACGCTATGGTATTCCTTTATCCTTAAGCACCTTGTCAAATGGGCTACTCATAGGTCTTACTAGCGGTCTTACC
GAAGCGATGAAAAACAAAAAGGGTGGCTTTAACCAAAACTATTTTGGAGATTACATGATGATGCAAATGACGAGGCAAAC
TGGTATCAGCCTAAATAATATTATCGCTCAAATCATGCGAGAGCAAATCAGGATTAAGCCCATTATCACTATTAGAGAAG
GAAGCCATATTTTTATTAGTCCTAATACGGATATTTGGTTTCCTATCCCTAAAAACAATGAAGTCTTAGCGAAATTTTTT
AATGAAGAAAAGGAGCAAAATAATGATACAAAATAG
ATGAAAAAACTTCTTTTACTTTTAGATCATAAAATCATAAAAATTGGCTTAATTATTGTGATTGTATTAGTTGGTTTTTT
TCTTTTTTACGAACAAGAAATCAAAGAAAAAGCTGTTAATGTTTCTCAAGGTAAATTCCCTACTTCATCTTATTTGTTTC
AAGCTTACGAAGGCATTAAGAATAAAATAGATACTATCAATGAAGTGAAACCAAACGATGAAGCTAAAAGCGTTAATGAG
AATATAGAAAAAACACAAAAAGATTTAGATGACTTTAATGCACTAGTGCAAAAATTACCAAATTTGCCTAAGGATTTTAA
TAAAACGCTTATTAAACCACAAAATCCATCCTTCAACTACAATACCGCTAACGAAGAAGAAAAAACCCGCCTTGTGATTT
TAGCGTCTCGTATTAGCAGCCAAAAAGAAACGCAGCCTCCAACCTCTATAAAAAATAGTGTTTCTAATACAAAATATAAA
GAAAAACAAGAACTTGAAAAAGAATACGGCTCTAGCGGTTTTAAAAATTTTAAAAGAAAAAATGTAGCGAGCAGTGAAAA
CAAACTTTTGAGAACGATTACAGCTGACAGAATGATCCCAGCCATTCTGATCACTCCTATTAGTAGTGAAATAGGGGGGA
GTAAGATAGTCGCTCAAGTGGAGAGTGATATATACGCAACAATGGGTAGAGCGGTTTTAATCCCTAAAGGGAGTAGAGCC
ATAGGCTATTACAACTCTAATAACAAAATAGGAGAATACCGCTTAGAAATTGCTTGGAATAGGATAATCACGCCACAAGG
GGTCAATATCATACTAAGCGATGCTAAGGGAGCTGATGTCAAGGGCTATAACGGCATGATAGGCACACTCCATAACAAAT
ATTGGGAACGCTATGGTATTCCTTTATCCTTAAGCACCTTGTCAAATGGGCTACTCATAGGTCTTACTAGCGGTCTTACC
GAAGCGATGAAAAACAAAAAGGGTGGCTTTAACCAAAACTATTTTGGAGATTACATGATGATGCAAATGACGAGGCAAAC
TGGTATCAGCCTAAATAATATTATCGCTCAAATCATGCGAGAGCAAATCAGGATTAAGCCCATTATCACTATTAGAGAAG
GAAGCCATATTTTTATTAGTCCTAATACGGATATTTGGTTTCCTATCCCTAAAAACAATGAAGTCTTAGCGAAATTTTTT
AATGAAGAAAAGGAGCAAAATAATGATACAAAATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
46.348 |
96.594 |
0.448 |