Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   NHM99_RS20900 Genome accession   NZ_CP099801
Coordinates   4007488..4008531 (-) Length   347 a.a.
NCBI ID   WP_001013206.1    Uniprot ID   -
Organism   Bacillus paranthracis strain SSBC101     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4002488..4013531
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NHM99_RS20855 (NHM99_20855) - 4002916..4003116 (-) 201 WP_000106079.1 YqzE family protein -
  NHM99_RS20860 (NHM99_20860) aroK 4003155..4003652 (-) 498 WP_000836625.1 shikimate kinase AroK -
  NHM99_RS20865 (NHM99_20865) - 4003772..4004422 (-) 651 WP_000183848.1 2OG-Fe(II) oxygenase -
  NHM99_RS20870 (NHM99_20870) comGG 4004598..4004969 (-) 372 WP_000595194.1 competence type IV pilus minor pilin ComGG -
  NHM99_RS20875 (NHM99_20875) comGF 4004966..4005436 (-) 471 WP_000923058.1 competence type IV pilus minor pilin ComGF -
  NHM99_RS20880 (NHM99_20880) comGE 4005406..4005708 (-) 303 WP_000829518.1 competence type IV pilus minor pilin ComGE -
  NHM99_RS20885 (NHM99_20885) comGD 4005701..4006156 (-) 456 WP_000810387.1 comG operon protein ComGD -
  NHM99_RS20890 (NHM99_20890) comGC 4006153..4006452 (-) 300 WP_001178694.1 competence type IV pilus major pilin ComGC -
  NHM99_RS20895 (NHM99_20895) comGB 4006464..4007495 (-) 1032 WP_000473553.1 competence type IV pilus assembly protein ComGB -
  NHM99_RS20900 (NHM99_20900) comGA 4007488..4008531 (-) 1044 WP_001013206.1 competence protein ComGA Machinery gene
  NHM99_RS20905 (NHM99_20905) - 4008737..4009432 (+) 696 WP_253129622.1 metalloregulator ArsR/SmtB family transcription factor -
  NHM99_RS20910 (NHM99_20910) - 4009558..4009800 (+) 243 WP_000440719.1 DUF2626 domain-containing protein -
  NHM99_RS20915 (NHM99_20915) - 4009908..4011302 (+) 1395 WP_001094339.1 L-cystine transporter -
  NHM99_RS20920 (NHM99_20920) - 4011477..4011884 (-) 408 WP_000877911.1 hypothetical protein -
  NHM99_RS20925 (NHM99_20925) - 4011972..4012187 (-) 216 WP_001008331.1 DUF3912 family protein -
  NHM99_RS20930 (NHM99_20930) - 4012442..4012753 (+) 312 WP_001093243.1 hypothetical protein -
  NHM99_RS20935 (NHM99_20935) - 4012790..4013278 (-) 489 WP_000764271.1 hypothetical protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 39361.84 Da        Isoelectric Point: 9.1826

>NTDB_id=701701 NHM99_RS20900 WP_001013206.1 4007488..4008531(-) (comGA) [Bacillus paranthracis strain SSBC101]
MNGIESFANTILKEACRVQASDLHIVPRKKDVVIQLRIGKDLMTKQYIEKEFGEKLVSHFKFLASMDIGERRKPQNGSLY
LQMDGQEVYLRLSTLPTVYQESLVIRLHLQASIQPLSHLSLFPSTAKKLLSFLHYSHGLLVFTGPTGSGKTTTMYALLEV
IRKKKTRRIVTLEDPVEKRNDDVLQIQINEKAGITYEAGLKAILRHDPDVILVGEIRDEETAKIAIRASLTGHLVMTTLH
TNDAKGAILRFMDFGITRQEIEQSLLAIAAQRLVELKCPFCKRKCSTVCKSMRQVRQASIYELLYGYELKQAIKEANGEC
VTYKHETLESSLRKGYALGFLEEDVYV

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=701701 NHM99_RS20900 WP_001013206.1 4007488..4008531(-) (comGA) [Bacillus paranthracis strain SSBC101]
ATGAATGGAATTGAAAGCTTTGCGAATACGATTTTGAAAGAGGCGTGTAGGGTACAAGCTTCGGATTTACATATTGTGCC
CCGGAAGAAGGATGTAGTGATTCAACTACGCATAGGGAAAGATTTAATGACGAAACAATACATTGAAAAGGAATTTGGAG
AAAAACTTGTTTCACACTTTAAATTTTTAGCATCCATGGATATAGGGGAGAGGCGGAAGCCACAAAATGGTTCACTGTAT
TTACAAATGGATGGACAGGAAGTGTATTTACGTCTTTCCACGCTTCCAACTGTATATCAAGAAAGTCTCGTTATTCGTCT
TCATTTACAAGCATCTATTCAGCCGTTATCTCATCTTTCGTTATTTCCAAGTACAGCGAAGAAACTACTTTCTTTTTTAC
ATTATTCCCATGGGTTACTCGTATTTACTGGACCGACTGGATCGGGGAAGACAACAACAATGTATGCATTATTAGAGGTA
ATTAGAAAAAAGAAAACACGCCGCATCGTTACACTGGAAGATCCAGTTGAAAAAAGAAATGACGATGTATTACAAATTCA
AATAAATGAAAAAGCAGGTATCACATATGAGGCGGGACTAAAGGCTATTTTGCGTCATGATCCAGATGTTATTTTAGTGG
GTGAAATTCGTGATGAAGAAACAGCAAAAATCGCTATAAGAGCAAGTTTGACTGGCCATTTAGTAATGACGACACTGCAT
ACGAATGATGCGAAAGGAGCAATACTTCGGTTTATGGACTTTGGCATAACAAGGCAAGAGATTGAACAATCTTTATTGGC
TATAGCTGCACAGCGACTTGTTGAATTGAAGTGTCCGTTTTGTAAAAGAAAGTGCTCAACTGTATGTAAATCAATGAGGC
AAGTAAGGCAAGCGAGTATTTATGAGTTGTTATATGGATATGAGTTAAAACAAGCGATTAAAGAAGCAAACGGGGAATGT
GTCACGTACAAGCATGAGACATTAGAGTCTTCGTTGCGAAAAGGATACGCTTTAGGATTTTTAGAAGAGGATGTTTATGT
TTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

58.501

100

0.585
  pilB Vibrio campbellii strain DS40M4

35.977

100

0.366