Detailed information NTG0701699

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PCP51_RS20655
• Genome accession: NZ_CP115283
• Coordinates: 4427309..4428313 (-)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain F009
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4422309..4433313

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PCP51_RS20640 (PCP51_20630)	-	4422793..4423800 (+)	1008	WP_003092265.1	TolB family protein	-
PCP51_RS20645 (PCP51_20635)	mutS	4423926..4426493 (+)	2568	WP_003122151.1	DNA mismatch repair protein MutS	-
PCP51_RS20650 (PCP51_20640)	fdxA	4426560..4426883 (+)	324	WP_003092272.1	ferredoxin FdxA	-
PCP51_RS20655 (PCP51_20645)	rpoS	4427309..4428313 (-)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PCP51_RS20660 (PCP51_20650)	-	4428418..4429311 (-)	894	WP_003138035.1	peptidoglycan DD-metalloendopeptidase family protein	-
PCP51_RS20665 (PCP51_20655)	-	4429357..4429992 (-)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PCP51_RS20670 (PCP51_20660)	surE	4430025..4430774 (-)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
PCP51_RS20675 (PCP51_20665)	truD	4430762..4431829 (-)	1068	WP_003092343.1	tRNA pseudouridine(13) synthase TruD	-
PCP51_RS20680 (PCP51_20670)	ispF	4431826..4432299 (-)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PCP51_RS20685 (PCP51_20675)	fghA	4432370..4433221 (-)	852	WP_003138034.1	S-formylglutathione hydrolase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=701699 PCP51_RS20655 WP_003113871.1 4427309..4428313(-) (rpoS) [Pseudomonas aeruginosa strain F009]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=701699 PCP51_RS20655 WP_003113871.1 4427309..4428313(-) (rpoS) [Pseudomonas aeruginosa strain F009]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGTCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653