Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   PCP80_RS09560 Genome accession   NZ_CP115280
Coordinates   2044632..2044997 (+) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain F010     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2039632..2049997
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP80_RS09530 (PCP80_09545) pyrR 2040254..2040766 (-) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  PCP80_RS09535 (PCP80_09550) ruvX 2040878..2041312 (-) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  PCP80_RS09540 (PCP80_09555) - 2041312..2041881 (-) 570 WP_003084577.1 YqgE/AlgH family protein -
  PCP80_RS09545 (PCP80_09560) - 2041930..2042823 (-) 894 WP_009315060.1 energy transducer TonB -
  PCP80_RS09550 (PCP80_09565) gshB 2042970..2043923 (-) 954 WP_003100943.1 glutathione synthase -
  PCP80_RS09555 (PCP80_09570) pilG 2044178..2044585 (+) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  PCP80_RS09560 (PCP80_09575) pilH 2044632..2044997 (+) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  PCP80_RS09565 (PCP80_09580) - 2045048..2045584 (+) 537 WP_003084590.1 chemotaxis protein CheW -
  PCP80_RS09570 (PCP80_09585) pilJ 2045669..2047717 (+) 2049 WP_003084592.1 chemotaxis chemoreceptor PilJ -
  PCP80_RS09575 (PCP80_09590) pilK 2047778..2048653 (+) 876 WP_003128960.1 type 4 fimbrial methyltransferase PilK -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=701592 PCP80_RS09560 WP_003084587.1 2044632..2044997(+) (pilH) [Pseudomonas aeruginosa strain F010]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=701592 PCP80_RS09560 WP_003084587.1 2044632..2044997(+) (pilH) [Pseudomonas aeruginosa strain F010]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAATTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364