Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NH020_RS15165 Genome accession   NZ_CP099754
Coordinates   3154082..3154711 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 806883-9-2019     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3149082..3159711
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NH020_RS15150 (NH020_15150) helD 3149324..3151378 (-) 2055 WP_022645482.1 DNA helicase IV -
  NH020_RS15155 (NH020_15155) yccF 3151501..3151947 (+) 447 WP_001261235.1 YccF domain-containing protein -
  NH020_RS15160 (NH020_15160) yccS 3151957..3154119 (+) 2163 WP_000875041.1 YccS family putative transporter -
  NH020_RS15165 (NH020_15165) sxy/tfoX 3154082..3154711 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  NH020_RS15170 (NH020_15170) sulA 3154930..3155439 (+) 510 WP_000288704.1 SOS-induced cell division inhibitor SulA -
  NH020_RS15175 (NH020_15175) ompA 3155796..3156836 (+) 1041 WP_022645481.1 porin OmpA -
  NH020_RS15180 (NH020_15180) matP 3156913..3157365 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  NH020_RS15185 (NH020_15185) ycbZ 3157551..3159312 (+) 1762 Protein_2993 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=701545 NH020_RS15165 WP_000839153.1 3154082..3154711(-) (sxy/tfoX) [Escherichia coli strain 806883-9-2019]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=701545 NH020_RS15165 WP_000839153.1 3154082..3154711(-) (sxy/tfoX) [Escherichia coli strain 806883-9-2019]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTTTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTAGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1