Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   NH461_RS24885 Genome accession   NZ_CP099735
Coordinates   1824627..1825796 (+) Length   389 a.a.
NCBI ID   WP_261604631.1    Uniprot ID   -
Organism   Photobacterium sp. TY1-4     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1819627..1830796
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NH461_RS24870 (NH461_24800) dsbD 1820295..1822172 (+) 1878 WP_261603633.1 protein-disulfide reductase DsbD -
  NH461_RS24875 (NH461_24805) - 1822267..1823640 (-) 1374 WP_261603634.1 alanine/glycine:cation symporter family protein -
  NH461_RS24880 - 1824283..1824414 (+) 132 WP_261603635.1 hypothetical protein -
  NH461_RS24885 (NH461_24810) cqsA 1824627..1825796 (+) 1170 WP_261604631.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  NH461_RS24890 (NH461_24815) - 1825909..1827939 (-) 2031 WP_261603636.1 hybrid sensor histidine kinase/response regulator -
  NH461_RS24895 (NH461_24820) nhaA 1828109..1829446 (-) 1338 WP_261603637.1 Na+/H+ antiporter NhaA -
  NH461_RS24900 (NH461_24825) - 1829544..1830758 (-) 1215 WP_261603638.1 MFS transporter -

Sequence

Protein


Download         Length: 389 a.a.        Molecular weight: 42818.08 Da        Isoelectric Point: 6.6408

>NTDB_id=701413 NH461_RS24885 WP_261604631.1 1824627..1825796(+) (cqsA) [Photobacterium sp. TY1-4]
MPENPAFVRKKKIESHLNELIYPRKNQQHLVLGQQPSEGAIVLQSNDYLAISNHDKIRDAYFAALEQGRKDVVMSAIFLH
KDLEVDSFEQQLAQYTGYEHCILSQSGWAANIGLIQTVLPPNTPVYIDFFAHMSLWDGARHAQGEIHPFLHNNVRQLGKL
IRRHGPGLILVDSVYSTLGTVAPLTEIVALAKQTGCAILVDESHSLGTHGPQGAGLVAELGLTDDVDFLTVSLAKSFAYR
AGAILCSQKIGQCLPFVAHPAIFSSALLNHEIEVLKATLAVIKAGDVRRERLFVQSEKLRQGLRSLGLHIQSESQIIALE
TGPEDQTEIVRDHLEACQVFGSVFCQPATPKNKNLVRFSVNSDVTDAEIDHILSACSLIEPKIMTGKRC

Nucleotide


Download         Length: 1170 bp        

>NTDB_id=701413 NH461_RS24885 WP_261604631.1 1824627..1825796(+) (cqsA) [Photobacterium sp. TY1-4]
ATCCCCGAAAACCCTGCCTTCGTTCGTAAAAAAAAGATTGAATCTCATCTGAACGAGCTCATCTACCCCCGCAAAAACCA
GCAGCATCTGGTGCTGGGCCAACAGCCGAGTGAAGGCGCAATTGTTTTACAAAGTAACGACTACCTGGCTATCTCGAATC
ATGACAAGATTCGTGATGCCTATTTTGCCGCTCTCGAACAGGGACGCAAAGACGTGGTGATGTCCGCGATTTTTTTGCAC
AAAGACCTGGAAGTCGACAGTTTCGAACAGCAATTGGCCCAGTACACGGGCTATGAGCATTGTATCCTGTCGCAATCGGG
CTGGGCTGCCAACATCGGGCTGATCCAAACGGTACTGCCGCCGAACACGCCGGTGTATATCGACTTTTTTGCCCATATGT
CATTGTGGGATGGTGCCCGCCATGCGCAGGGGGAGATCCATCCGTTTTTGCACAACAATGTCCGTCAGCTGGGCAAATTG
ATCCGCCGTCATGGTCCCGGGTTGATTCTGGTAGACTCGGTGTACAGCACTTTGGGTACCGTCGCGCCGCTCACCGAGAT
TGTGGCGTTGGCGAAACAGACCGGATGCGCCATTTTGGTTGATGAGTCGCACTCGTTGGGTACCCATGGGCCGCAAGGGG
CTGGCTTGGTTGCTGAGTTGGGCCTGACCGACGATGTGGATTTTCTGACGGTCAGTCTGGCAAAAAGTTTTGCCTACCGG
GCGGGCGCGATTTTATGTAGTCAGAAAATTGGACAGTGTCTGCCGTTTGTTGCCCATCCGGCAATTTTCAGCTCAGCATT
GCTCAATCATGAAATCGAAGTCCTCAAGGCCACCCTGGCGGTCATCAAAGCGGGCGATGTACGCCGTGAGCGGCTGTTTG
TGCAGTCAGAGAAGTTGCGTCAGGGATTAAGATCCCTGGGGTTACATATTCAGAGCGAGTCCCAGATCATTGCCCTGGAA
ACCGGCCCGGAAGATCAGACGGAAATCGTTCGCGATCATTTGGAAGCCTGCCAGGTGTTTGGCTCGGTGTTCTGCCAGCC
GGCGACGCCGAAAAACAAAAACCTGGTGCGGTTCTCAGTCAACAGCGATGTTACCGATGCCGAGATCGATCATATCCTTT
CGGCGTGCAGTCTGATTGAGCCGAAAATCATGACGGGCAAACGTTGTTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(41-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

56.915

96.658

0.55