Detailed information NTG0701408

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: NH461_RS14005
• Genome accession: NZ_CP099734
• Coordinates: 3012129..3015524 (+)
• Length: 1131 a.a.
• NCBI ID: WP_261600941.1
• Uniprot ID: -
• Organism: Photobacterium sp. TY1-4
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 3007129..3020524

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NH461_RS13990 (NH461_13960)	hemL	3008005..3009300 (+)	1296	WP_261600938.1	glutamate-1-semialdehyde 2,1-aminomutase	-
NH461_RS13995 (NH461_13965)	-	3009623..3010672 (+)	1050	WP_410000113.1	AI-2E family transporter	-
NH461_RS14000 (NH461_13970)	rsmC	3010783..3011802 (+)	1020	WP_261600940.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
NH461_RS14005 (NH461_13975)	chiS	3012129..3015524 (+)	3396	WP_261600941.1	response regulator	Regulator
NH461_RS14010 (NH461_13980)	-	3016186..3017865 (+)	1680	WP_261600942.1	ABC transporter substrate-binding protein	-
NH461_RS14015 (NH461_13985)	-	3018002..3018988 (+)	987	WP_261600943.1	ABC transporter permease	-
NH461_RS14020 (NH461_13990)	-	3018991..3020016 (+)	1026	WP_261600944.1	ABC transporter permease	-

Sequence

Protein

• Length: 1131 a.a.
• Molecular weight: 126946.82 Da
• Isoelectric Point: 5.7662

>NTDB_id=701408 NH461_RS14005 WP_261600941.1 3012129..3015524(+) (chiS) [Photobacterium sp. TY1-4]
MQKTARFKRLQHTLMLAFLVLSITPLTLSALFFLNSHTNDLIEQSTNHLASLLENKQKQLNSYFAARESEVQSFARSELA
NASGGRFYGLVGAYHQLGDIDTLIKGVGNRRYFTDTLTAKTDNNSYSGNYVGHERYRLMYKRYNWAYAEYLKRSDFTDIL
LVDLDGNIVYSASNPDKFSLNLASSASPYPALHQTFTTIRDKTRQAQREPEQVPVVFTDFSTATVTGEHAAWFAAPIIQQ
GYLHSYVFFRLDNQSISGLITDTGPHASHIQTLLVGGDHHARLPGSPSQPSDLSSPSIDQALSGERGVGSFLNFNQIPVL
SAFAPVDVLGNTWALVIELPEEEAFARVHQLEKIFAGAMLTAIALVIIASHWLSNSITAPLLRLTWAAEQVSAGDMDQTI
SSTERGDEIGRLAVSFSRMQRSIREKITLIREQNTELEHNLQVIRQQNDELQTADKLKDEFLATTSHELRTPLHGMVGIA
ESLLAGASGPIQPAQRRQLEMIINSGQRLTNLVDDLLDYHKMRYGDLTIEKQAVDLASAVRLVLELSSHLLGSKPIRIIN
QIPDHLPLVLGDEQRLEQVLYNLVGNAIKYTSEGKIILSATVLDHQVRIQVVDTGQGIPPEQLEHIFEPLIQANTQSGHY
RQGAGLGLSISRQLIELMGGRLYVSSQPMVGATFSFTLNLASEADIVDSRQASACKHFQLPALETATCDSQDLPENPDGE
LLLVVDDEPVNLQILNNFLRLEGYRVLTADNGREAMTLVDTEQPALILLDIMMPEMSGYEVCHQLRQRHSLIELPIIMLS
ALGQVQDRIKGFESGANDYLTKPFNKEELVARIHAHLQAGKTEIQRQKNQALEQEIQRREAVEAGLLEAQSRLLGLLEST
QEAILCIRQDGRIRYANSAAGKLLQRAPEQLERHCIDDFLATHLPEEINTNHHYHGHLLFRCGETMTGLETDVIHLPESS
GLQRMLIIDHHGPTTRQRIEMLENAIEVICGFAADGDRSNLQQLRELGEEFTHLADRLDGKEQEKAETIRALLVETMKAT
LRYWEDATQKTKFELAEESGLWRVYLDRSTLQTRTLDKYLHQETLPKSPRWRTVLNTIDFVLERCHSTSATTAERHQLEH
MKEQLQQLLSA

Nucleotide

• Length: 3396 bp

>NTDB_id=701408 NH461_RS14005 WP_261600941.1 3012129..3015524(+) (chiS) [Photobacterium sp. TY1-4]
ATGCAGAAAACAGCCCGTTTTAAACGACTTCAGCATACCCTTATGCTGGCCTTTCTCGTTCTCAGTATTACCCCGCTGAC
CCTGTCAGCCCTCTTTTTCCTCAACTCCCATACCAATGATCTGATCGAGCAAAGCACCAACCATCTGGCCTCGCTGTTGG
AGAACAAGCAAAAGCAGCTCAACAGTTACTTTGCCGCCCGCGAGTCTGAAGTCCAGAGCTTCGCCCGCTCAGAGCTGGCC
AATGCCAGCGGCGGTCGCTTTTACGGCCTGGTCGGCGCCTATCACCAACTGGGGGATATCGACACGCTGATCAAAGGCGT
CGGCAACCGCCGCTACTTTACCGACACCCTGACCGCCAAAACCGACAACAACAGCTACAGCGGCAACTATGTCGGCCACG
AACGCTACCGGCTGATGTACAAGCGCTATAACTGGGCTTACGCTGAATATCTCAAACGCTCGGACTTTACCGATATCCTG
CTGGTCGATCTCGACGGCAATATCGTCTACTCCGCCAGTAATCCGGACAAATTCAGCCTCAACCTGGCATCGAGCGCCTC
GCCGTACCCGGCGCTGCACCAGACCTTCACCACTATCCGAGATAAAACCCGTCAGGCCCAACGGGAGCCCGAGCAGGTGC
CGGTGGTCTTTACCGACTTCAGTACGGCCACTGTAACCGGCGAGCATGCGGCCTGGTTTGCCGCCCCGATCATCCAGCAG
GGCTACCTGCACAGCTATGTCTTCTTCCGGCTCGACAACCAGTCCATCAGCGGGTTGATCACCGACACCGGTCCCCATGC
CAGCCATATCCAGACCCTGCTGGTCGGCGGCGATCATCACGCCCGCCTGCCGGGCAGCCCGTCTCAGCCGAGTGACCTGT
CGAGCCCGAGTATCGATCAGGCCCTCAGTGGTGAGCGCGGTGTGGGCAGCTTTTTAAACTTCAACCAAATCCCGGTGCTC
AGCGCATTCGCCCCGGTGGATGTGCTGGGCAACACCTGGGCCCTGGTGATTGAGCTGCCGGAAGAAGAGGCCTTTGCCCG
GGTTCATCAGCTGGAGAAAATCTTTGCCGGGGCCATGCTCACTGCCATTGCGCTGGTGATCATCGCCTCGCACTGGCTGT
CGAACTCCATCACTGCCCCGCTGCTACGCCTGACCTGGGCCGCAGAGCAAGTCTCGGCTGGGGATATGGACCAGACCATC
AGCAGTACCGAACGCGGTGATGAAATTGGCCGCCTGGCCGTGAGTTTTTCCCGGATGCAGCGCTCGATCCGTGAAAAAAT
CACCCTGATCCGGGAGCAAAATACCGAGCTGGAACACAACCTGCAGGTGATCCGCCAACAGAATGATGAGCTCCAGACCG
CCGATAAACTCAAAGATGAGTTCCTGGCGACCACCTCCCACGAACTGCGCACCCCGCTGCACGGGATGGTCGGGATAGCC
GAATCCCTGCTGGCCGGTGCCAGCGGCCCGATCCAACCCGCCCAGCGCCGCCAACTGGAAATGATCATCAACAGCGGCCA
GCGCCTGACCAACCTGGTCGATGATCTGCTCGACTACCACAAAATGCGTTACGGCGATCTGACTATCGAGAAGCAAGCGG
TCGATCTGGCGTCTGCCGTCCGCCTGGTGCTGGAGCTTTCCAGCCACCTGCTCGGCAGCAAGCCAATCCGGATCATCAAC
CAGATCCCCGACCACTTGCCGCTGGTGCTGGGGGATGAGCAACGGCTCGAACAAGTGCTTTATAACCTGGTCGGCAATGC
CATTAAGTACACCTCGGAAGGCAAAATCATCCTGTCCGCCACGGTGCTGGATCACCAGGTCCGGATCCAGGTGGTCGACA
CCGGCCAGGGGATCCCGCCAGAGCAACTCGAGCATATTTTTGAGCCGCTGATCCAGGCCAATACCCAATCCGGCCACTAC
CGCCAGGGCGCCGGGCTGGGCTTATCCATCAGTCGGCAGCTCATTGAGCTGATGGGCGGTCGGCTCTATGTCAGCAGCCA
GCCGATGGTCGGGGCGACGTTCAGTTTCACCCTCAACCTCGCCTCGGAAGCCGACATCGTCGACAGCCGGCAGGCCAGCG
CCTGCAAACATTTCCAGCTCCCCGCGCTGGAAACGGCCACTTGCGACAGCCAGGATTTGCCGGAAAACCCGGATGGGGAA
CTACTGCTGGTCGTCGATGACGAGCCGGTCAACCTGCAGATCCTTAATAACTTCCTACGCCTGGAAGGCTACCGGGTCCT
GACCGCCGACAACGGGCGCGAGGCCATGACACTGGTCGACACCGAACAGCCTGCCCTGATCCTGCTCGATATCATGATGC
CGGAAATGTCCGGCTATGAAGTGTGCCACCAGCTACGGCAACGCCATTCGCTGATTGAGCTGCCGATCATCATGCTCTCG
GCCCTGGGGCAGGTCCAGGATCGGATCAAGGGATTTGAATCCGGTGCCAACGACTACCTGACCAAGCCGTTCAACAAAGA
AGAGCTCGTCGCCCGCATCCATGCCCACCTGCAGGCCGGGAAGACGGAAATCCAGCGCCAGAAGAATCAGGCGCTGGAGC
AGGAAATTCAGCGCCGGGAGGCCGTGGAAGCCGGCCTGCTGGAAGCCCAGAGCCGTCTGCTGGGCCTGCTCGAATCGACC
CAGGAGGCCATTCTGTGTATCCGCCAGGACGGTCGGATCCGCTATGCCAACAGTGCTGCCGGCAAGCTGCTGCAGCGGGC
GCCGGAGCAGCTCGAACGCCATTGCATTGATGATTTTCTGGCGACCCACCTGCCGGAAGAGATCAACACCAACCACCATT
ACCACGGCCACCTGCTGTTCCGCTGTGGCGAGACCATGACGGGATTGGAAACCGATGTCATCCATCTGCCGGAAAGTTCC
GGCCTGCAACGGATGCTGATAATCGATCACCACGGCCCCACCACCCGACAGCGCATTGAAATGCTGGAAAACGCCATTGA
AGTGATCTGCGGCTTTGCCGCCGACGGGGATCGCAGCAACCTGCAGCAACTGCGCGAATTGGGTGAGGAATTTACCCATC
TGGCCGATCGCCTGGACGGCAAAGAGCAGGAGAAAGCCGAGACCATCCGCGCCCTGCTGGTCGAAACCATGAAGGCCACG
CTCCGGTACTGGGAAGATGCGACGCAAAAAACCAAGTTCGAATTAGCTGAAGAAAGCGGCCTGTGGCGGGTCTATCTCGA
CCGCAGTACGCTGCAAACCCGGACGCTGGACAAATACCTGCACCAGGAAACCCTGCCCAAATCGCCGCGCTGGCGCACAG
TGCTGAACACCATCGATTTCGTTCTGGAGCGTTGCCATAGCACATCGGCAACCACCGCAGAGCGCCATCAGCTCGAGCAC
ATGAAAGAGCAGCTCCAGCAGCTCCTGAGCGCCTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (723-833)

• HAMP domain (HAMP) (372-425)

• His Kinase A (phospho-acceptor) domain (HisKA) (458-523)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (571-680)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	57.407	100	0.576