Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   M2Y48_RS04830 Genome accession   NZ_AP023344
Coordinates   1014513..1016033 (-) Length   506 a.a.
NCBI ID   WP_248419636.1    Uniprot ID   -
Organism   Helicobacter pylori strain JSHR3     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1009513..1021033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2Y48_RS04820 (JSHR3_09930) - 1011100..1012392 (-) 1293 WP_248419634.1 restriction endonuclease subunit S -
  M2Y48_RS04825 (JSHR3_09940) - 1012428..1014488 (-) 2061 WP_248419635.1 heavy metal translocating P-type ATPase -
  M2Y48_RS04830 (JSHR3_09950) comM 1014513..1016033 (-) 1521 WP_248419636.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  M2Y48_RS04835 (JSHR3_09960) def 1016036..1016563 (-) 528 WP_001185877.1 peptide deformylase -
  M2Y48_RS04840 (JSHR3_09970) clpP 1016568..1017155 (-) 588 WP_000540571.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  M2Y48_RS04845 (JSHR3_09980) tig 1017178..1018533 (-) 1356 WP_248419637.1 trigger factor -
  M2Y48_RS04850 (JSHR3_09990) - 1018646..1019482 (-) 837 WP_248419638.1 outer membrane protein -
  M2Y48_RS04855 (JSHR3_10000) hpaA 1019509..1020291 (-) 783 WP_248419639.1 HpaA family protein -
  M2Y48_RS04860 (JSHR3_10010) moaC 1020410..1020886 (-) 477 WP_248419641.1 cyclic pyranopterin monophosphate synthase MoaC -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 57166.13 Da        Isoelectric Point: 8.2333

>NTDB_id=70132 M2Y48_RS04830 WP_248419636.1 1014513..1016033(-) (comM) [Helicobacter pylori strain JSHR3]
MINTIFCATMQRGVAEIVAVEATFTRALPAFVISGLANSSIQEARQRVQSALQNNDFTFPPLKITINLSPSDLPKSGSHF
DLPIALLIALQKQELAFKEWFAFGELGLDGKIKPNPNIFPMLLDIAIKHPHAKVIAPKANEELFSLIPNLQCFFVEHFKE
ALEILQNPEIKADTHTKKLPFKTIELNDKEYYFSDSYALDFKEVKGQAVAKEAALIASAGFHNLILEGSPGCGKSMIINR
MRYILPPLSLNEILEATKLRILSEQDSAYYPLRSFRNPHQSASKSSILGSSSLKEPKPGEIALAHNGMLFFDELPHFKKD
ILEALREPLENNKLVISRVHSKIEYETSFLFVGAQNPCLCGNLLSATKACRCQDREITQYKNRLSEPFLDRIDLFVQMEE
GNYKDTPSHSWTSKEMHQLVLLAFKQQKLRKQSAFNGKLNEEQIERFCPLNAEAQKLLEQAVERFNLSMRSVNKVKKVAR
TIADLNACEDIEKSHMLKALSFRKIS

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=70132 M2Y48_RS04830 WP_248419636.1 1014513..1016033(-) (comM) [Helicobacter pylori strain JSHR3]
ATGATTAACACGATATTTTGTGCAACCATGCAAAGGGGAGTGGCAGAAATCGTGGCTGTGGAGGCGACTTTCACAAGGGC
TTTGCCGGCGTTTGTGATTTCAGGCTTGGCTAATAGCTCTATCCAAGAAGCCAGACAGCGGGTCCAATCGGCTTTACAAA
ATAACGATTTCACTTTCCCGCCTTTAAAAATCACCATCAACCTTTCCCCTTCAGATTTGCCTAAATCTGGGAGCCATTTT
GATTTGCCTATCGCTCTTTTAATCGCTTTGCAAAAACAAGAGTTGGCTTTTAAAGAGTGGTTTGCTTTTGGGGAGTTAGG
GCTTGATGGCAAGATCAAACCCAATCCTAACATTTTCCCCATGCTTTTAGACATTGCCATCAAACACCCCCATGCTAAAG
TCATTGCGCCTAAGGCTAATGAAGAGCTTTTTTCGCTCATCCCTAATTTGCAATGCTTTTTTGTGGAGCATTTTAAAGAA
GCTTTAGAAATCTTGCAAAACCCTGAAATCAAAGCAGACACCCACACGAAAAAATTACCCTTTAAAACGATAGAATTGAA
CGATAAAGAGTATTATTTTTCAGACTCCTATGCCTTAGATTTTAAAGAAGTTAAGGGGCAAGCTGTCGCCAAAGAAGCCG
CTTTGATCGCTAGCGCTGGGTTTCATAACTTGATTTTAGAGGGAAGTCCAGGGTGTGGGAAAAGCATGATTATTAATCGC
ATGCGTTATATCTTGCCTCCATTAAGCCTGAATGAAATCCTAGAAGCGACAAAATTACGCATTTTAAGCGAGCAAGACAG
CGCCTATTACCCCTTAAGGAGTTTTAGAAACCCTCACCAAAGCGCTTCAAAATCCAGCATTTTAGGCTCAAGCTCTCTAA
AAGAGCCAAAACCTGGCGAAATCGCACTAGCGCATAACGGCATGCTCTTTTTTGATGAATTGCCTCATTTCAAAAAGGAT
ATTTTGGAAGCTTTAAGAGAGCCTTTAGAAAACAATAAATTGGTGATCTCACGAGTGCATAGCAAGATTGAATACGAAAC
CTCTTTTTTATTTGTTGGGGCTCAAAACCCTTGCTTGTGCGGGAATTTACTCAGTGCAACCAAAGCATGCCGTTGCCAAG
ATAGAGAAATCACGCAGTATAAAAACCGCTTGAGCGAGCCTTTTTTGGACAGGATTGATTTGTTTGTGCAAATGGAAGAA
GGGAATTATAAAGACACGCCGTCGCATTCTTGGACTTCAAAAGAGATGCATCAATTGGTGTTATTAGCCTTCAAACAGCA
AAAATTAAGGAAACAGAGCGCTTTTAATGGTAAGCTTAATGAAGAGCAGATAGAACGATTTTGCCCTTTAAACGCTGAAG
CGCAAAAGTTGTTAGAGCAGGCGGTTGAAAGGTTTAATCTGTCCATGCGCTCTGTCAATAAGGTCAAAAAAGTCGCTAGG
ACGATTGCGGATTTAAACGCTTGCGAGGATATAGAAAAATCTCACATGCTTAAAGCGCTGAGTTTTAGAAAGATTTCTTA
A

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-503)

Subunit ChlI of Mg-chelatase (ChlI)

(20-140)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-403)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

97.628

100

0.976
  comM Acinetobacter baylyi ADP1

36.204

100

0.366

Multiple sequence alignment