Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   NHF51_RS18390 Genome accession   NZ_CP099717
Coordinates   4010480..4011919 (-) Length   479 a.a.
NCBI ID   WP_218291498.1    Uniprot ID   -
Organism   Aeromonas encheleia strain SOD01     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4005480..4016919
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NHF51_RS18360 (NHF51_18360) - 4005761..4006501 (+) 741 WP_252995149.1 KDGP aldolase family protein -
  NHF51_RS18365 (NHF51_18365) - 4006600..4008504 (+) 1905 WP_252995150.1 transcription antiterminator -
  NHF51_RS18370 (NHF51_18370) npr 4008523..4008795 (-) 273 WP_042653289.1 PTS phosphocarrier protein NPr -
  NHF51_RS18375 (NHF51_18375) rapZ 4008816..4009682 (-) 867 WP_252995151.1 RNase adapter RapZ -
  NHF51_RS18380 (NHF51_18380) ptsN 4009723..4010169 (-) 447 WP_042653291.1 PTS IIA-like nitrogen regulatory protein PtsN -
  NHF51_RS18385 (NHF51_18385) hpf 4010172..4010459 (-) 288 WP_042653292.1 ribosome hibernation promoting factor -
  NHF51_RS18390 (NHF51_18390) rpoN/rpoN1 4010480..4011919 (-) 1440 WP_218291498.1 RNA polymerase factor sigma-54 Machinery gene
  NHF51_RS18395 (NHF51_18395) lptB 4011985..4012710 (-) 726 WP_218291497.1 LPS export ABC transporter ATP-binding protein -
  NHF51_RS18400 (NHF51_18400) lptA 4012723..4013274 (-) 552 WP_370301961.1 lipopolysaccharide transport periplasmic protein LptA -
  NHF51_RS18405 (NHF51_18405) lptC 4013246..4013806 (-) 561 WP_042653296.1 LPS export ABC transporter periplasmic protein LptC -
  NHF51_RS18410 (NHF51_18410) kdsC 4013803..4014357 (-) 555 WP_252995153.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  NHF51_RS18415 (NHF51_18415) - 4014357..4015352 (-) 996 WP_218291496.1 KpsF/GutQ family sugar-phosphate isomerase -
  NHF51_RS18420 (NHF51_18420) mlaF 4015559..4016359 (+) 801 WP_252995154.1 phospholipid ABC transporter ATP-binding protein MlaF -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 53818.75 Da        Isoelectric Point: 4.3677

>NTDB_id=701305 NHF51_RS18390 WP_218291498.1 4010480..4011919(-) (rpoN/rpoN1) [Aeromonas encheleia strain SOD01]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSTLELQQEIQQALDNNPLLEQEESETQETNPEEAVDASQLDSSDAMAQDKMP
DELPVDTTWDDVYSAGTAQSAGPIHDGEDSVYQGETTESLQDYLLWQMRLTPFSDLDAAIALAIIDAIDESGYLTVSLED
IQAAVSSDEVEVELDEVEAVLKRVQHFDPIGIAARSVQECLLIQLAQYSPDLPWLNEAREVINEHMDLLGNRDYRTLARK
TKLKESDLKEVLDLIQQLEPRPGNGIIQNESQYVIPDVSVVKKGYKWVVELNPDSAPRIRVNETYAAMARQAKTSQDSQF
IRSHLQEAKWFIKSLESRNDTLLKVASCIVEQQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLLIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=701305 NHF51_RS18390 WP_218291498.1 4010480..4011919(-) (rpoN/rpoN1) [Aeromonas encheleia strain SOD01]
ATGAAGCCGACATTACAGTTGCGTCTCGGTCAATCCCTGACCATGACGCCACAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCACGCTGGAACTCCAGCAGGAAATTCAGCAAGCGCTCGACAATAACCCCTTGCTGGAGCAAGAGGAGAGCGAGA
CGCAGGAGACCAACCCGGAAGAGGCGGTCGACGCCAGTCAACTCGATTCCAGCGATGCCATGGCGCAGGACAAGATGCCA
GATGAGCTGCCGGTGGATACCACCTGGGACGATGTCTATTCGGCCGGAACGGCCCAGAGCGCCGGCCCCATCCACGATGG
GGAGGACAGCGTCTATCAGGGGGAAACCACCGAGAGCCTGCAGGACTATCTGCTGTGGCAGATGCGACTGACCCCCTTCA
GCGATCTGGATGCCGCCATTGCCCTCGCCATCATCGACGCCATCGACGAATCCGGCTATTTGACTGTTTCTCTCGAGGAT
ATTCAGGCCGCAGTCAGCAGCGATGAGGTAGAAGTCGAACTGGATGAAGTCGAAGCCGTGCTCAAGCGGGTGCAGCATTT
CGATCCGATCGGTATTGCCGCCCGCTCGGTACAGGAATGTCTGCTGATCCAGCTCGCTCAGTATTCGCCCGATCTGCCCT
GGCTCAATGAGGCGAGGGAGGTGATCAACGAGCACATGGACTTGCTCGGCAACCGCGATTACCGGACCCTGGCGCGCAAG
ACCAAACTCAAGGAGAGCGACCTCAAGGAGGTGCTGGATCTCATCCAGCAGCTGGAGCCAAGACCAGGCAATGGCATCAT
CCAGAACGAGTCTCAATATGTGATCCCGGATGTGTCCGTGGTCAAGAAGGGCTACAAGTGGGTGGTGGAACTGAATCCGG
ATTCGGCGCCGCGCATCAGGGTCAATGAGACCTACGCGGCCATGGCCAGACAGGCCAAGACCAGTCAGGACTCTCAGTTC
ATCCGCTCCCACTTGCAGGAAGCCAAGTGGTTCATCAAGAGTCTGGAGAGTCGTAACGACACCCTGCTCAAGGTCGCCAG
CTGCATCGTCGAACAGCAGCAGGGCTTCTTCGAATACGGTGAAGAGGCCATGAAGCCCATGGTGCTCAACGACATCGCCG
AGGCAGTGGAGATGCACGAGTCGACGATCTCGCGGGTGACGACCCAGAAGTACATGCACACGCCCCGTGGCATCTTTGAA
CTGAAGTTTTTTTTCTCCAGTCACGTCAATACGGAGGGAGGAGGAGAGTGCTCATCGACCGCAATTCGCGCCCTGATCAA
AAAGTTGGTGACGGCAGAGAACCCTGCCAAACCGCTTAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCGAGACGCACGATCGCAAAGTACCGTGAATCCTTGTTGATCCCGCCATCCAATCAGCGCAAACGCCTGGTTTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.957

100

0.486