Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | M2Y48_RS03985 | Genome accession | NZ_AP023344 |
| Coordinates | 832322..833557 (+) | Length | 411 a.a. |
| NCBI ID | WP_000734989.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain JSHR3 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 827322..838557
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M2Y48_RS03970 (JSHR3_08170) | - | 827734..829668 (+) | 1935 | WP_001870316.1 | type IA DNA topoisomerase | - |
| M2Y48_RS07860 (JSHR3_08180) | - | 829668..829796 (+) | 129 | WP_001185489.1 | hypothetical protein | - |
| M2Y48_RS03975 (JSHR3_08190) | - | 829798..830784 (+) | 987 | WP_212782706.1 | VirB8/TrbF family protein | - |
| M2Y48_RS03980 (JSHR3_08200) | - | 830784..832325 (+) | 1542 | WP_212782705.1 | TrbG/VirB9 family P-type conjugative transfer protein | - |
| M2Y48_RS03985 (JSHR3_08210) | comB10 | 832322..833557 (+) | 1236 | WP_000734989.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| M2Y48_RS03990 (JSHR3_08220) | - | 833627..833920 (+) | 294 | WP_000671327.1 | hypothetical protein | - |
| M2Y48_RS03995 (JSHR3_08230) | - | 833913..834176 (+) | 264 | WP_000564648.1 | hypothetical protein | - |
| M2Y48_RS04000 (JSHR3_08240) | - | 834173..834472 (+) | 300 | WP_000660136.1 | hypothetical protein | - |
| M2Y48_RS04005 (JSHR3_08250) | - | 834472..835414 (+) | 943 | Protein_796 | ATPase, T2SS/T4P/T4SS family | - |
| M2Y48_RS04010 (JSHR3_08260) | - | 835411..835866 (+) | 456 | WP_096396225.1 | mobilization protein | - |
| M2Y48_RS04015 (JSHR3_08270) | - | 835863..836153 (+) | 291 | WP_096396223.1 | hypothetical protein | - |
| M2Y48_RS04020 (JSHR3_08280) | - | 836154..836711 (+) | 558 | WP_248419536.1 | hypothetical protein | - |
| M2Y48_RS04025 (JSHR3_08290) | - | 836712..838439 (+) | 1728 | WP_248419537.1 | type IV secretory system conjugative DNA transfer family protein | - |
Sequence
Protein
Download Length: 411 a.a. Molecular weight: 46454.57 Da Isoelectric Point: 10.0008
>NTDB_id=70128 M2Y48_RS03985 WP_000734989.1 832322..833557(+) (comB10) [Helicobacter pylori strain JSHR3]
MKKLLLLLEHKIIKIGLIIVIVLAGFFLFYEQEIKEKAVNVSQGKFPTSSYLFQAYEGIKNKIDTINEVKPNDETKSVNE
NIEKTQKDLDDFNVLVQKLPNLPKDFNKTLIKPQSPSFNYNTANEEEKIRLVILASRISSQKETQPPTSIKNSVSNTKSK
EKQELEKEYGSSGFKNFKRKNVASSENKLLRTITADRMIPAILITPISSEIGGSKIVAQVESDIYATMGRAVLIPKGSRA
IGYYNSNNKIGEYRLEIAWNRIITPQGVNIILSDAKGADVKGYNGMIGTLHNKYWERYGIPLSLSTLSNGLLIGLTSGLT
EAMKNKKGGFNQNYFGDYMMMQMTRQTGISLNNIIAQIMREQIRIKPIITIREGSHIFISPNTDIWFPIPKNNEVLAKFF
NEEKEQNNDTK
MKKLLLLLEHKIIKIGLIIVIVLAGFFLFYEQEIKEKAVNVSQGKFPTSSYLFQAYEGIKNKIDTINEVKPNDETKSVNE
NIEKTQKDLDDFNVLVQKLPNLPKDFNKTLIKPQSPSFNYNTANEEEKIRLVILASRISSQKETQPPTSIKNSVSNTKSK
EKQELEKEYGSSGFKNFKRKNVASSENKLLRTITADRMIPAILITPISSEIGGSKIVAQVESDIYATMGRAVLIPKGSRA
IGYYNSNNKIGEYRLEIAWNRIITPQGVNIILSDAKGADVKGYNGMIGTLHNKYWERYGIPLSLSTLSNGLLIGLTSGLT
EAMKNKKGGFNQNYFGDYMMMQMTRQTGISLNNIIAQIMREQIRIKPIITIREGSHIFISPNTDIWFPIPKNNEVLAKFF
NEEKEQNNDTK
Nucleotide
Download Length: 1236 bp
>NTDB_id=70128 M2Y48_RS03985 WP_000734989.1 832322..833557(+) (comB10) [Helicobacter pylori strain JSHR3]
ATGAAAAAACTTCTTTTACTCTTAGAGCATAAAATCATAAAAATTGGCTTAATTATTGTGATTGTATTAGCTGGTTTTTT
TCTTTTTTACGAACAAGAAATCAAAGAAAAAGCTGTTAATGTTTCTCAAGGTAAATTCCCTACTTCATCTTATTTGTTTC
AAGCTTACGAAGGCATTAAGAATAAAATAGATACTATCAATGAAGTGAAACCAAACGATGAAACTAAAAGCGTTAATGAG
AATATAGAAAAAACACAAAAAGATTTAGATGATTTTAATGTGCTAGTGCAAAAATTACCAAATTTGCCTAAGGATTTTAA
TAAAACGCTTATTAAACCACAAAGTCCATCCTTCAACTACAATACCGCTAACGAAGAAGAAAAAATCCGCCTTGTGATTT
TAGCGTCTCGTATTAGCAGCCAAAAAGAAACGCAGCCTCCAACCTCTATAAAAAATAGTGTTTCTAATACAAAATCTAAA
GAAAAACAAGAACTTGAAAAAGAATACGGCTCTAGCGGTTTTAAAAATTTTAAAAGAAAAAATGTAGCGAGCAGTGAAAA
CAAACTTTTGAGAACGATTACAGCTGACAGAATGATCCCAGCCATTCTGATCACTCCTATTAGTAGTGAAATAGGGGGGA
GTAAGATAGTCGCTCAAGTGGAGAGTGATATATACGCAACGATGGGTAGAGCGGTTTTAATCCCTAAGGGGAGTAGAGCC
ATAGGTTATTACAACTCTAATAACAAAATAGGAGAATACCGCTTAGAAATTGCTTGGAATAGGATAATCACGCCACAAGG
GGTCAATATCATACTAAGCGATGCTAAGGGGGCTGATGTCAAGGGTTATAACGGCATGATAGGCACACTCCATAACAAAT
ATTGGGAACGCTATGGTATTCCTTTATCCTTAAGCACCTTGTCAAATGGGCTACTCATAGGTCTTACTAGCGGTCTTACC
GAAGCGATGAAAAACAAAAAGGGTGGCTTTAACCAAAACTATTTTGGAGATTACATGATGATGCAAATGACGAGACAAAC
TGGTATCAGCCTAAATAATATTATCGCTCAAATCATGCGAGAGCAAATCAGGATTAAGCCCATTATCACTATTAGAGAGG
GAAGCCATATTTTTATTAGTCCTAATACAGATATTTGGTTTCCTATCCCTAAAAACAATGAAGTCTTAGCGAAATTTTTT
AATGAAGAAAAGGAGCAAAACAATGATACAAAATAG
ATGAAAAAACTTCTTTTACTCTTAGAGCATAAAATCATAAAAATTGGCTTAATTATTGTGATTGTATTAGCTGGTTTTTT
TCTTTTTTACGAACAAGAAATCAAAGAAAAAGCTGTTAATGTTTCTCAAGGTAAATTCCCTACTTCATCTTATTTGTTTC
AAGCTTACGAAGGCATTAAGAATAAAATAGATACTATCAATGAAGTGAAACCAAACGATGAAACTAAAAGCGTTAATGAG
AATATAGAAAAAACACAAAAAGATTTAGATGATTTTAATGTGCTAGTGCAAAAATTACCAAATTTGCCTAAGGATTTTAA
TAAAACGCTTATTAAACCACAAAGTCCATCCTTCAACTACAATACCGCTAACGAAGAAGAAAAAATCCGCCTTGTGATTT
TAGCGTCTCGTATTAGCAGCCAAAAAGAAACGCAGCCTCCAACCTCTATAAAAAATAGTGTTTCTAATACAAAATCTAAA
GAAAAACAAGAACTTGAAAAAGAATACGGCTCTAGCGGTTTTAAAAATTTTAAAAGAAAAAATGTAGCGAGCAGTGAAAA
CAAACTTTTGAGAACGATTACAGCTGACAGAATGATCCCAGCCATTCTGATCACTCCTATTAGTAGTGAAATAGGGGGGA
GTAAGATAGTCGCTCAAGTGGAGAGTGATATATACGCAACGATGGGTAGAGCGGTTTTAATCCCTAAGGGGAGTAGAGCC
ATAGGTTATTACAACTCTAATAACAAAATAGGAGAATACCGCTTAGAAATTGCTTGGAATAGGATAATCACGCCACAAGG
GGTCAATATCATACTAAGCGATGCTAAGGGGGCTGATGTCAAGGGTTATAACGGCATGATAGGCACACTCCATAACAAAT
ATTGGGAACGCTATGGTATTCCTTTATCCTTAAGCACCTTGTCAAATGGGCTACTCATAGGTCTTACTAGCGGTCTTACC
GAAGCGATGAAAAACAAAAAGGGTGGCTTTAACCAAAACTATTTTGGAGATTACATGATGATGCAAATGACGAGACAAAC
TGGTATCAGCCTAAATAATATTATCGCTCAAATCATGCGAGAGCAAATCAGGATTAAGCCCATTATCACTATTAGAGAGG
GAAGCCATATTTTTATTAGTCCTAATACAGATATTTGGTTTCCTATCCCTAAAAACAATGAAGTCTTAGCGAAATTTTTT
AATGAAGAAAAGGAGCAAAACAATGATACAAAATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
54.483 |
70.56 |
0.384 |