Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   PCP64_RS09570 Genome accession   NZ_CP115276
Coordinates   2043415..2044440 (+) Length   341 a.a.
NCBI ID   WP_003097294.1    Uniprot ID   A0A0H2ZJL6
Organism   Pseudomonas aeruginosa strain F013     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2038415..2049440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP64_RS09545 (PCP64_09545) - 2038603..2038920 (-) 318 WP_079391177.1 tetratricopeptide repeat protein -
  PCP64_RS09550 (PCP64_09550) trkA 2039069..2040442 (-) 1374 WP_003107053.1 Trk system potassium transporter TrkA -
  PCP64_RS09555 (PCP64_09555) rsmB 2040470..2041774 (-) 1305 WP_034040398.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  PCP64_RS09560 (PCP64_09560) fmt 2041771..2042715 (-) 945 WP_023090531.1 methionyl-tRNA formyltransferase -
  PCP64_RS09565 (PCP64_09565) def 2042770..2043276 (-) 507 WP_003107059.1 peptide deformylase -
  PCP64_RS09570 (PCP64_09570) tsaP 2043415..2044440 (+) 1026 WP_003097294.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  PCP64_RS09575 (PCP64_09575) dprA 2044575..2045663 (+) 1089 WP_034019669.1 DNA-processing protein DprA Machinery gene
  PCP64_RS09580 (PCP64_09580) - 2045704..2046261 (+) 558 WP_003097300.1 L-threonylcarbamoyladenylate synthase -
  PCP64_RS09585 (PCP64_09585) - 2046271..2047248 (-) 978 WP_003111202.1 NADPH:quinone reductase -
  PCP64_RS09590 (PCP64_09590) hemF 2047439..2048356 (+) 918 WP_003097311.1 oxygen-dependent coproporphyrinogen oxidase -
  PCP64_RS09595 (PCP64_09595) aroE 2048414..2049238 (+) 825 WP_003111201.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37586.01 Da        Isoelectric Point: 9.3358

>NTDB_id=701279 PCP64_RS09570 WP_003097294.1 2043415..2044440(+) (tsaP) [Pseudomonas aeruginosa strain F013]
MRKSLVALLLLAASGLAQAQVDLREGHPDRYTVVRGDTLWDISGKFLRQPWKWPELWHANPQIQNPHLIYPGDTLSLVYV
DGQPRLVLNRGESRGTIKLSPKIRSTPIAEAIPTIPLDKINSFLLANRIVDDEKTFTSAPYIVAGNAERIVSGTGDRIYA
RGKFADGQPAYGIFRQGKVYIDPKTKEVLGINADDIGGGEVVATEGDVATLALTRTTQEVRLGDRLFPTEERAVNSTFMP
GEPSREVKGEIIDVPRGVTQIGQFDVVTLNRGQRDGLAEGNVLAIYKVGETVRDRVTGESVKIPDERAGLLMVFRTYKKL
SYALVLMASRPLSVTDRVQNP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=701279 PCP64_RS09570 WP_003097294.1 2043415..2044440(+) (tsaP) [Pseudomonas aeruginosa strain F013]
ATGAGGAAATCACTAGTCGCCCTTCTGCTCCTTGCCGCGAGCGGTCTGGCGCAGGCCCAGGTCGACCTCAGGGAAGGGCA
TCCGGACCGCTACACGGTGGTCAGGGGCGATACCCTGTGGGACATCTCGGGGAAATTCCTCCGCCAGCCATGGAAGTGGC
CGGAACTCTGGCACGCCAACCCGCAGATCCAGAATCCCCATCTGATCTACCCCGGCGACACCCTCAGCCTGGTCTACGTC
GATGGCCAGCCGCGCCTGGTGCTGAACCGTGGCGAATCGCGCGGGACCATCAAGCTGTCGCCGAAGATCCGCAGCACGCC
GATCGCCGAGGCCATCCCGACCATCCCGCTGGACAAGATCAACAGCTTCCTGCTGGCCAACCGCATCGTCGATGACGAGA
AGACCTTCACCAGTGCGCCGTACATCGTCGCCGGCAACGCCGAGCGGATCGTCAGCGGCACCGGCGACCGCATCTACGCT
CGCGGCAAGTTCGCCGACGGCCAGCCGGCCTATGGCATCTTCCGCCAGGGCAAGGTCTACATCGATCCGAAGACCAAGGA
AGTCCTCGGCATCAACGCCGACGACATCGGCGGCGGCGAGGTGGTGGCCACCGAAGGCGACGTCGCGACCCTGGCGCTGA
CCCGCACCACCCAGGAAGTGCGCCTGGGCGACCGCCTGTTCCCCACCGAGGAGCGTGCGGTGAATTCCACCTTCATGCCC
GGCGAGCCGAGCCGCGAGGTGAAGGGCGAAATCATCGACGTACCGCGCGGCGTGACCCAGATCGGCCAGTTCGACGTGGT
CACCCTGAACCGTGGCCAGCGCGACGGGCTGGCCGAGGGCAACGTGCTGGCGATCTACAAGGTCGGCGAGACGGTGCGCG
ACCGCGTTACCGGTGAGTCGGTGAAGATTCCCGACGAACGCGCCGGCCTGCTGATGGTGTTCCGTACCTACAAGAAGCTG
AGCTACGCCCTGGTTCTGATGGCCAGCAGGCCGCTCTCGGTAACCGACAGGGTGCAGAATCCCTGA

Domains

Predicted by InterProScan.

LysM domain (LysM)

(31-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZJL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

36.512

100

0.393