Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   PCP64_RS06695 Genome accession   NZ_CP115276
Coordinates   1420868..1421464 (-) Length   198 a.a.
NCBI ID   WP_003095839.1    Uniprot ID   G3XD30
Organism   Pseudomonas aeruginosa strain F013     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1415868..1426464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP64_RS06675 (PCP64_06675) aroK 1416999..1417517 (-) 519 WP_003095833.1 shikimate kinase AroK -
  PCP64_RS06680 (PCP64_06680) pilQ 1417529..1419673 (-) 2145 WP_329006830.1 type 4a pilus secretin PilQ Machinery gene
  PCP64_RS06685 (PCP64_06685) comL/pilP 1419727..1420251 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  PCP64_RS06690 (PCP64_06690) pilO 1420248..1420871 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  PCP64_RS06695 (PCP64_06695) pilN 1420868..1421464 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  PCP64_RS06700 (PCP64_06700) pilM 1421464..1422528 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  PCP64_RS06705 (PCP64_06705) - 1422713..1425184 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22213.55 Da        Isoelectric Point: 10.0895

>NTDB_id=701259 PCP64_RS06695 WP_003095839.1 1420868..1421464(-) (pilN) [Pseudomonas aeruginosa strain F013]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=701259 PCP64_RS06695 WP_003095839.1 1420868..1421464(-) (pilN) [Pseudomonas aeruginosa strain F013]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCTGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGACTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGGCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACTGACCTGAAGATGACCGGCAAGAACATCGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAATATGGACGCGTCCGAGTGGCTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAGGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5EOU

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369