Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   PCP64_RS06685 Genome accession   NZ_CP115276
Coordinates   1419727..1420251 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain F013     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1414727..1425251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP64_RS06670 (PCP64_06670) aroB 1415843..1416949 (-) 1107 WP_003162482.1 3-dehydroquinate synthase -
  PCP64_RS06675 (PCP64_06675) aroK 1416999..1417517 (-) 519 WP_003095833.1 shikimate kinase AroK -
  PCP64_RS06680 (PCP64_06680) pilQ 1417529..1419673 (-) 2145 WP_329006830.1 type 4a pilus secretin PilQ Machinery gene
  PCP64_RS06685 (PCP64_06685) comL/pilP 1419727..1420251 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  PCP64_RS06690 (PCP64_06690) pilO 1420248..1420871 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  PCP64_RS06695 (PCP64_06695) pilN 1420868..1421464 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  PCP64_RS06700 (PCP64_06700) pilM 1421464..1422528 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  PCP64_RS06705 (PCP64_06705) - 1422713..1425184 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=701257 PCP64_RS06685 WP_003095836.1 1419727..1420251(-) (comL/pilP) [Pseudomonas aeruginosa strain F013]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=701257 PCP64_RS06685 WP_003095836.1 1419727..1420251(-) (comL/pilP) [Pseudomonas aeruginosa strain F013]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362