Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   M2Y48_RS03905 Genome accession   NZ_AP023344
Coordinates   814144..814407 (+) Length   87 a.a.
NCBI ID   WP_096468242.1    Uniprot ID   -
Organism   Helicobacter pylori strain JSHR3     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 809144..819407
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2Y48_RS03875 (JSHR3_07940) - 810026..810370 (-) 345 WP_096468245.1 hypothetical protein -
  M2Y48_RS03880 (JSHR3_07950) rsmH 810390..811316 (-) 927 WP_212893429.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  M2Y48_RS03885 (JSHR3_07960) hopE 811495..812316 (-) 822 WP_248420190.1 outer membrane protein -
  M2Y48_RS03890 (JSHR3_07970) - 812481..813269 (+) 789 WP_001140593.1 hypothetical protein -
  M2Y48_RS03895 (JSHR3_07980) - 813373..813852 (+) 480 WP_172417642.1 hypothetical protein -
  M2Y48_RS03900 (JSHR3_07990) comB2 813849..814133 (+) 285 WP_000736106.1 TrbC/VirB2 family protein Machinery gene
  M2Y48_RS03905 (JSHR3_08000) comB3 814144..814407 (+) 264 WP_096468242.1 competence protein ComB Machinery gene
  M2Y48_RS03910 (JSHR3_08010) - 814418..814654 (+) 237 WP_001186276.1 hypothetical protein -
  M2Y48_RS03915 - 814654..817240 (+) 2587 Protein_777 VirB4 family type IV secretion/conjugal transfer ATPase -
  M2Y48_RS03920 - 817237..817371 (+) 135 WP_033582542.1 hypothetical protein -
  M2Y48_RS03925 (JSHR3_08050) - 817364..818470 (+) 1107 WP_108303929.1 VirB8/TrbF family protein -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10052.91 Da        Isoelectric Point: 5.7206

>NTDB_id=70125 M2Y48_RS03905 WP_096468242.1 814144..814407(+) (comB3) [Helicobacter pylori strain JSHR3]
MQLFGISVSNLKEISSKEKFLWLNAKSFLIAGFVPFVMIPWLDFLNSLMLYVCFLLVFSIAEFFDEDISDILISHSKIKT
KTNSFYA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=70125 M2Y48_RS03905 WP_096468242.1 814144..814407(+) (comB3) [Helicobacter pylori strain JSHR3]
ATGCAATTATTCGGCATTTCAGTTTCTAATCTCAAAGAAATCAGTTCTAAAGAAAAGTTTCTTTGGCTCAATGCTAAAAG
CTTTTTAATCGCAGGGTTTGTGCCTTTTGTAATGATACCTTGGCTAGATTTTTTAAATTCTTTAATGCTGTATGTGTGCT
TTTTATTGGTTTTTAGCATAGCGGAGTTCTTTGATGAAGATATAAGCGACATTTTAATCTCCCATTCTAAGATTAAAACC
AAAACTAATTCATTTTATGCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

58.621

100

0.586

Multiple sequence alignment