Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | M2Y48_RS02740 | Genome accession | NZ_AP023344 |
| Coordinates | 559055..560065 (-) | Length | 336 a.a. |
| NCBI ID | WP_050833277.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain JSHR3 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 554055..565065
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M2Y48_RS02695 (JSHR3_05550) | - | 554153..554527 (-) | 375 | WP_000772153.1 | chemotaxis response regulator CheY | - |
| M2Y48_RS02700 (JSHR3_05560) | - | 554818..555420 (+) | 603 | WP_000291635.1 | outer membrane protein | - |
| M2Y48_RS02710 (JSHR3_05570) | - | 555552..555959 (-) | 408 | WP_096468055.1 | hypothetical protein | - |
| M2Y48_RS02715 (JSHR3_05580) | - | 555962..556204 (-) | 243 | WP_000944395.1 | PP0621 family protein | - |
| M2Y48_RS02720 (JSHR3_05590) | rsmG | 556198..556734 (-) | 537 | WP_096468056.1 | 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG | - |
| M2Y48_RS02725 (JSHR3_05600) | queA | 556731..557768 (-) | 1038 | WP_248420094.1 | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | - |
| M2Y48_RS02730 (JSHR3_05610) | tatC | 557769..558518 (-) | 750 | WP_248420095.1 | twin-arginine translocase subunit TatC | - |
| M2Y48_RS02735 (JSHR3_05620) | tatB | 558511..558987 (-) | 477 | WP_000467627.1 | Sec-independent protein translocase protein TatB | - |
| M2Y48_RS02740 (JSHR3_05630) | ruvB | 559055..560065 (-) | 1011 | WP_050833277.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| M2Y48_RS02745 (JSHR3_05640) | panB | 560066..560878 (-) | 813 | WP_180431698.1 | 3-methyl-2-oxobutanoate hydroxymethyltransferase | - |
| M2Y48_RS02750 (JSHR3_05650) | - | 561027..561749 (+) | 723 | WP_025222602.1 | hypothetical protein | - |
| M2Y48_RS02755 (JSHR3_05660) | - | 561739..562593 (+) | 855 | WP_248420098.1 | outer membrane beta-barrel protein | - |
| M2Y48_RS02760 (JSHR3_05670) | - | 562602..563540 (+) | 939 | WP_212893122.1 | outer membrane protein | - |
| M2Y48_RS02765 (JSHR3_05680) | - | 563550..564872 (+) | 1323 | WP_248420100.1 | M23 family metallopeptidase | - |
Sequence
Protein
Download Length: 336 a.a. Molecular weight: 37335.32 Da Isoelectric Point: 6.0715
>NTDB_id=70120 M2Y48_RS02740 WP_050833277.1 559055..560065(-) (ruvB) [Helicobacter pylori strain JSHR3]
MKERIVNLETLDFETSQEVSLRPNLWEDYIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN
IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAAKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLNITLHALNELGVNELGFDEADLAYLSLLANAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATPK
THVLLKIPTLNPQTLF
MKERIVNLETLDFETSQEVSLRPNLWEDYIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN
IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAAKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLNITLHALNELGVNELGFDEADLAYLSLLANAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATPK
THVLLKIPTLNPQTLF
Nucleotide
Download Length: 1011 bp
>NTDB_id=70120 M2Y48_RS02740 WP_050833277.1 559055..560065(-) (ruvB) [Helicobacter pylori strain JSHR3]
ATGAAAGAACGGATAGTCAATTTAGAAACTTTGGATTTTGAAACTTCTCAAGAAGTGAGTTTGCGCCCTAATCTTTGGGA
AGATTATATCGGTCAAGAAAAGATTAAAAGCAATTTGCAAATTTCTATTTGTGCGGCTAAAAAACGCCAAGAAAGTTTGG
ATCACATGCTCTTTTTTGGGCCGCCCGGTTTGGGTAAGACTTCAATAAGCCATATCATCGCTAAAGAAATGGAAACCAAT
ATCAAAATCACCGCCGCTCCCATGATAGAAAAAAGCGGTGATTTGGCTGCCATTTTGACTAATTTGCAAGCTAAAGACAT
TCTTTTTATTGATGAAATCCACCGGCTTAGCCCAGCGATTGAAGAGGTTTTATACCCGGCTATGGAAGATTTCAGGCTGG
ATATTATCATAGGCTCAGGCCCAGCGGCTCAAACCATTAAAATTGATTTGCCCCCTTTCACCCTCATCGGCGCTACCACC
AGAGCCGGAATGCTCTCTAACCCTTTAAGAGACAGATTTGGCATGAGCTTTAGAATGCAATTTTATAGCCCTAGCGAATT
AGCCCTTATCATCAAAAAAGCCGCCGCTAAACTCAACCAAGACATCAAAGAAGAAAGCGCTGATGAAATCGCTAAAAGGA
GTAGAGGCACGCCAAGGATCGCTTTAAGGCTTTTAAAAAGGGTGCGCGATTTTGCGTTAGTCAAAAATTCAAGCTTGATG
GATTTAAACATCACTTTGCATGCTTTGAATGAATTAGGCGTGAATGAATTAGGCTTTGATGAAGCGGATTTGGCGTATTT
GTCTTTGTTGGCTAACGCTCAAGGACGACCGGTGGGTTTGAACACGATTGCAGCATCTATGAGAGAAGATGAAGGCACGA
TTGAAGATGTGATTGAGCCTTTTTTGCTCGCTAATGGTTATTTAGAGCGCACCGCTAAAGGCAGAATCGCCACGCCTAAA
ACCCATGTGCTTTTAAAAATCCCCACTTTAAATCCCCAAACTTTATTTTAA
ATGAAAGAACGGATAGTCAATTTAGAAACTTTGGATTTTGAAACTTCTCAAGAAGTGAGTTTGCGCCCTAATCTTTGGGA
AGATTATATCGGTCAAGAAAAGATTAAAAGCAATTTGCAAATTTCTATTTGTGCGGCTAAAAAACGCCAAGAAAGTTTGG
ATCACATGCTCTTTTTTGGGCCGCCCGGTTTGGGTAAGACTTCAATAAGCCATATCATCGCTAAAGAAATGGAAACCAAT
ATCAAAATCACCGCCGCTCCCATGATAGAAAAAAGCGGTGATTTGGCTGCCATTTTGACTAATTTGCAAGCTAAAGACAT
TCTTTTTATTGATGAAATCCACCGGCTTAGCCCAGCGATTGAAGAGGTTTTATACCCGGCTATGGAAGATTTCAGGCTGG
ATATTATCATAGGCTCAGGCCCAGCGGCTCAAACCATTAAAATTGATTTGCCCCCTTTCACCCTCATCGGCGCTACCACC
AGAGCCGGAATGCTCTCTAACCCTTTAAGAGACAGATTTGGCATGAGCTTTAGAATGCAATTTTATAGCCCTAGCGAATT
AGCCCTTATCATCAAAAAAGCCGCCGCTAAACTCAACCAAGACATCAAAGAAGAAAGCGCTGATGAAATCGCTAAAAGGA
GTAGAGGCACGCCAAGGATCGCTTTAAGGCTTTTAAAAAGGGTGCGCGATTTTGCGTTAGTCAAAAATTCAAGCTTGATG
GATTTAAACATCACTTTGCATGCTTTGAATGAATTAGGCGTGAATGAATTAGGCTTTGATGAAGCGGATTTGGCGTATTT
GTCTTTGTTGGCTAACGCTCAAGGACGACCGGTGGGTTTGAACACGATTGCAGCATCTATGAGAGAAGATGAAGGCACGA
TTGAAGATGTGATTGAGCCTTTTTTGCTCGCTAATGGTTATTTAGAGCGCACCGCTAAAGGCAGAATCGCCACGCCTAAA
ACCCATGTGCTTTTAAAAATCCCCACTTTAAATCCCCAAACTTTATTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Helicobacter pylori 26695 |
97.619 |
100 |
0.976 |
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
53.87 |
96.131 |
0.518 |
| ruvB | Synechocystis sp. PCC 6803 |
51.899 |
94.048 |
0.488 |
| ruvB | Streptococcus pneumoniae TIGR4 |
50.938 |
95.238 |
0.485 |
| ruvB | Streptococcus pneumoniae R6 |
50.938 |
95.238 |
0.485 |
| ruvB | Streptococcus pneumoniae D39 |
50.938 |
95.238 |
0.485 |