Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   NEE09_RS02180 Genome accession   NZ_CP099641
Coordinates   401600..402310 (-) Length   236 a.a.
NCBI ID   WP_000760673.1    Uniprot ID   A0A062WVH4
Organism   Streptococcus pneumoniae strain ATCC 700671     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 396600..407310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NEE09_RS02160 amiF 397508..398434 (+) 927 WP_001291294.1 ATP-binding cassette domain-containing protein Regulator
  NEE09_RS02165 - 399053..399862 (+) 810 Protein_373 ABC transporter substrate-binding protein -
  NEE09_RS02170 - 399874..400751 (+) 878 Protein_374 ABC transporter permease -
  NEE09_RS02175 - 400764..401567 (+) 804 WP_000157672.1 ABC transporter ATP-binding protein -
  NEE09_RS02180 treR 401600..402310 (-) 711 WP_000760673.1 trehalose operon repressor Regulator
  NEE09_RS02185 treP 402495..404462 (+) 1968 WP_000514304.1 PTS system trehalose-specific EIIBC component -
  NEE09_RS02190 treC 404640..406265 (+) 1626 WP_000171211.1 alpha,alpha-phosphotrehalase -
  NEE09_RS02195 - 406407..406655 (+) 249 WP_000364990.1 YneF family protein -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27607.78 Da        Isoelectric Point: 8.9698

>NTDB_id=701193 NEE09_RS02180 WP_000760673.1 401600..402310(-) (treR) [Streptococcus pneumoniae strain ATCC 700671]
MKKYQQLFKQIQETIQNETYAVGDFLPSEHDLMEQYQVSRDTVRKALSLLQEEGLIKKIRGQGSQVVKEETVNFPVSNLT
SYQELVKELGLRSKTNVVSLDKIIIDKKSSLITGFPEFRMVWKVVRQRVVDDLVSVLDTDYLDMELIPNLTRQIAEQSIY
SYIENGLKLLIDYAQKEITIDHSSDRDKILMDIGKDPYVVSIKSKVYLQDGRQFQFTESRHKLEKFRFVDFAKRKK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=701193 NEE09_RS02180 WP_000760673.1 401600..402310(-) (treR) [Streptococcus pneumoniae strain ATCC 700671]
ATGAAGAAATACCAACAATTATTTAAGCAAATCCAAGAAACCATTCAAAACGAGACTTACGCTGTCGGAGATTTCCTTCC
TAGCGAGCACGACCTTATGGAGCAATATCAAGTGAGTCGTGATACCGTCCGAAAGGCCCTGTCTCTCCTCCAAGAGGAAG
GATTGATCAAAAAGATAAGAGGGCAAGGTTCTCAAGTCGTCAAAGAAGAAACCGTCAATTTCCCTGTATCCAACCTAACC
AGCTACCAAGAACTAGTTAAAGAACTTGGACTGCGCTCTAAAACCAACGTGGTCAGTCTGGACAAGATTATTATTGATAA
AAAATCCTCACTGATAACCGGTTTCCCAGAGTTTCGGATGGTTTGGAAGGTGGTCCGCCAGCGTGTGGTGGATGATCTGG
TATCCGTTCTGGATACAGACTATCTGGATATGGAACTCATCCCAAATCTCACTCGCCAAATTGCTGAGCAGTCTATCTAT
TCTTATATAGAAAATGGCCTCAAACTCCTTATTGATTATGCTCAGAAGGAAATCACCATTGACCACTCAAGCGACCGAGA
CAAGATTCTCATGGACATTGGCAAAGACCCTTATGTCGTTTCGATTAAATCAAAAGTCTATCTCCAAGACGGGCGCCAAT
TTCAGTTTACCGAAAGTCGCCATAAGTTAGAAAAATTTAGATTTGTAGATTTTGCAAAACGCAAGAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(89-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A062WVH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

59.322

100

0.593