Detailed information NTG0701155

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PCP38_RS10175
• Genome accession: NZ_CP115275
• Coordinates: 2210212..2211216 (-)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain F014
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2205212..2216216

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PCP38_RS10160 (PCP38_10155)	-	2205695..2206702 (+)	1008	WP_004351362.1	TolB family protein	-
PCP38_RS10165 (PCP38_10160)	mutS	2206828..2209395 (+)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
PCP38_RS10170 (PCP38_10165)	fdxA	2209462..2209785 (+)	324	WP_003119354.1	ferredoxin FdxA	-
PCP38_RS10175 (PCP38_10170)	rpoS	2210212..2211216 (-)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PCP38_RS10180 (PCP38_10175)	-	2211321..2212214 (-)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
PCP38_RS10185 (PCP38_10180)	-	2212260..2212895 (-)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PCP38_RS10190 (PCP38_10185)	surE	2212928..2213677 (-)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
PCP38_RS10195 (PCP38_10190)	truD	2213665..2214732 (-)	1068	WP_004351368.1	tRNA pseudouridine(13) synthase TruD	-
PCP38_RS10200 (PCP38_10195)	ispF	2214729..2215202 (-)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PCP38_RS10205 (PCP38_10200)	fghA	2215273..2216124 (-)	852	WP_004351371.1	S-formylglutathione hydrolase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=701155 PCP38_RS10175 WP_003113871.1 2210212..2211216(-) (rpoS) [Pseudomonas aeruginosa strain F014]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=701155 PCP38_RS10175 WP_003113871.1 2210212..2211216(-) (rpoS) [Pseudomonas aeruginosa strain F014]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653