Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   PCP38_RS07805 Genome accession   NZ_CP115275
Coordinates   1707707..1708036 (-) Length   109 a.a.
NCBI ID   WP_003091430.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain F014     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1702707..1713036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP38_RS07790 (PCP38_07790) uvrB 1704094..1706106 (-) 2013 WP_004350967.1 excinuclease ABC subunit UvrB Machinery gene
  PCP38_RS07795 (PCP38_07795) - 1706294..1707490 (+) 1197 WP_003104588.1 amino acid aminotransferase -
  PCP38_RS07805 (PCP38_07805) comEA/comE1 1707707..1708036 (-) 330 WP_003091430.1 ComEA family DNA-binding protein Machinery gene
  PCP38_RS07810 (PCP38_07810) - 1708227..1710224 (-) 1998 WP_009313767.1 polysaccharide biosynthesis protein -
  PCP38_RS07815 (PCP38_07815) - 1710355..1711380 (-) 1026 WP_004350972.1 MraY family glycosyltransferase -
  PCP38_RS07820 (PCP38_07820) - 1711377..1712336 (-) 960 WP_004350973.1 UDP-glucose 4-epimerase family protein -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11367.31 Da        Isoelectric Point: 8.0459

>NTDB_id=701150 PCP38_RS07805 WP_003091430.1 1707707..1708036(-) (comEA/comE1) [Pseudomonas aeruginosa strain F014]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=701150 PCP38_RS07805 WP_003091430.1 1707707..1708036(-) (comEA/comE1) [Pseudomonas aeruginosa strain F014]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385