Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   M2Y48_RS01335 Genome accession   NZ_AP023344
Coordinates   276269..276736 (+) Length   155 a.a.
NCBI ID   WP_212846789.1    Uniprot ID   -
Organism   Helicobacter pylori strain JSHR3     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 271269..281736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2Y48_RS01315 (JSHR3_02770) dnaK 271359..273221 (+) 1863 WP_000521019.1 molecular chaperone DnaK -
  M2Y48_RS01320 (JSHR3_02780) - 273455..274033 (-) 579 WP_096467891.1 hypothetical protein -
  M2Y48_RS01325 (JSHR3_02790) - 274141..275058 (+) 918 WP_212874462.1 O-acetylserine-dependent cystathionine beta-synthase -
  M2Y48_RS01330 (JSHR3_02800) - 275092..276234 (+) 1143 WP_096467893.1 cystathionine gamma-synthase -
  M2Y48_RS01335 (JSHR3_02810) luxS 276269..276736 (+) 468 WP_212846789.1 S-ribosylhomocysteine lyase Regulator
  M2Y48_RS01340 (JSHR3_02820) - 276911..278611 (+) 1701 WP_345893195.1 5'-nucleotidase C-terminal domain-containing protein -
  M2Y48_RS01345 (JSHR3_02830) tlpB 278814..280511 (+) 1698 WP_248419979.1 methyl-accepting chemotaxis protein -
  M2Y48_RS01350 (JSHR3_02840) - 280542..281324 (+) 783 WP_248419980.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17712.27 Da        Isoelectric Point: 6.8350

>NTDB_id=70110 M2Y48_RS01335 WP_212846789.1 276269..276736(+) (luxS) [Helicobacter pylori strain JSHR3]
MKTPKMNVESFNLDHTKVKAPYVRIADRKKGVNGDLIVKYDVRFKQPNKDHMDMPSLHSLEHLVAEIIRNHASYVVDWSP
MGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKATEVPACNEKQCGWAANHTLEGAQNLVRAFLDKRAEWSEVGV

Nucleotide


Download         Length: 468 bp        

>NTDB_id=70110 M2Y48_RS01335 WP_212846789.1 276269..276736(+) (luxS) [Helicobacter pylori strain JSHR3]
ATGAAAACGCCAAAAATGAATGTAGAGAGTTTTAATTTGGATCACACCAAAGTCAAAGCCCCTTATGTGCGTATCGCTGA
TCGCAAAAAGGGCGTTAATGGGGATTTGATCGTCAAATACGATGTGCGATTCAAACAGCCCAACAAAGATCACATGGACA
TGCCAAGCCTGCATTCTTTAGAGCATTTAGTCGCTGAGATTATCCGCAACCATGCCAGTTATGTTGTGGATTGGTCGCCT
ATGGGTTGCCAAACGGGATTTTATCTCACGGTGTTAAACCATGACAATTACACAGAGATTTTAGAGGTTTTAGAAAAGAC
GATGCAAGATGTGTTAAAGGCTACAGAAGTGCCTGCTTGCAATGAAAAGCAATGCGGTTGGGCAGCTAACCACACTTTAG
AGGGCGCGCAGAATTTAGTGCGCGCTTTTTTAGACAAACGCGCTGAGTGGTCTGAAGTGGGGGTTTGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(7-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

40.426

90.968

0.368

Multiple sequence alignment