Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NF680_RS22560 Genome accession   NZ_CP099602
Coordinates   5051866..5053233 (-) Length   455 a.a.
NCBI ID   WP_007909773.1    Uniprot ID   J2YZH4
Organism   Pseudomonas siliginis strain OTU6MONTID1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5046866..5058233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NF680_RS22535 (NF680_22535) - 5047010..5047714 (+) 705 WP_252876930.1 GntR family transcriptional regulator -
  NF680_RS22540 (NF680_22540) yjiA 5047829..5048806 (-) 978 WP_252876931.1 GTPase -
  NF680_RS22545 (NF680_22545) - 5048959..5049156 (-) 198 WP_003228401.1 YbdD/YjiX family protein -
  NF680_RS22550 (NF680_22550) - 5049172..5051238 (-) 2067 WP_041477781.1 carbon starvation CstA family protein -
  NF680_RS22555 (NF680_22555) - 5051398..5051766 (+) 369 WP_041477779.1 PilZ domain-containing protein -
  NF680_RS22560 (NF680_22560) radA 5051866..5053233 (-) 1368 WP_007909773.1 DNA repair protein RadA Machinery gene
  NF680_RS22565 (NF680_22565) - 5053281..5053826 (-) 546 WP_252876932.1 ankyrin repeat domain-containing protein -
  NF680_RS22570 (NF680_22570) katB 5053887..5055428 (-) 1542 WP_252876933.1 catalase KatB -
  NF680_RS22575 (NF680_22575) mscL 5055714..5056127 (+) 414 WP_024014404.1 large-conductance mechanosensitive channel protein MscL -
  NF680_RS22580 (NF680_22580) - 5056173..5056949 (-) 777 WP_041477773.1 ferredoxin--NADP reductase -
  NF680_RS22585 (NF680_22585) - 5057263..5057973 (+) 711 WP_041477771.1 autoinducer binding domain-containing protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48773.25 Da        Isoelectric Point: 6.8987

>NTDB_id=701027 NF680_RS22560 WP_007909773.1 5051866..5053233(-) (radA) [Pseudomonas siliginis strain OTU6MONTID1]
MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLTETMIESGGATAPTGRTGWAGQQAQIKTLAEVSIEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLAKSMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA
TARQEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKESPPGLQIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=701027 NF680_RS22560 WP_007909773.1 5051866..5053233(-) (radA) [Pseudomonas siliginis strain OTU6MONTID1]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGCGCAACCTTTCCCAAGTGGGCCGGGCAGTGCGGCGAGTG
CGGTGCCTGGAACACCCTGACCGAAACCATGATCGAAAGCGGCGGCGCCACGGCACCCACCGGGCGCACCGGTTGGGCTG
GCCAGCAGGCGCAGATCAAGACGCTCGCCGAAGTCAGCATCGAAGAGATTCCACGTTTTTCCACCGCCTCCGGTGAGCTC
GACCGCGTGCTCGGCGGTGGTCTGGTCGATGGCTCGGTGGTGCTGATCGGCGGTGATCCGGGGATCGGCAAATCGACCAT
TCTGTTGCAAACCCTGTGCAATCTGGCCAAAAGCATGCCGGCGCTGTACGTCACTGGTGAGGAATCCCAGCAGCAGGTGG
CGATGCGCGCCCGCCGTCTCGGCCTGCCGCAGGATCAACTGCGGGTGATGACCGAAACCTGCATCGAAACCATCATCGCC
ACCGCTCGCCAGGAAAAGCCCAAGGTGATGGTGATCGACTCGATCCAGACTATTTTCACCGAACAACTGCAATCGGCCCC
GGGCGGCGTGTCGCAGGTGCGCGAAAGTGCGGCGTTGCTGGTGCGTTACGCCAAGCAGAGCGGCACGGCGATCTTCCTCG
TCGGCCACGTCACCAAAGAGGGCGCCTTGGCCGGTCCGCGTGTGCTGGAACACATGGTCGATACCGTGCTGTATTTCGAA
GGTGAATCCGATGGTCGTCTGCGTCTGCTGCGTGCGGTGAAGAACCGTTTTGGCGCGGTCAACGAATTGGGCGTGTTCGG
CATGACCGACAAGGGCCTGAAAGAAGTCTCCAACCCATCGGCGATTTTTCTCACCCGCGCTCAGGAAGAAGTCCCGGGCA
GTGTGGTCATGGCGACGTGGGAAGGCACCCGGCCGATGCTGGTGGAAGTGCAGGCGCTGGTCGATGACAGCCATCTGGCC
AACCCGCGTCGGGTGACGCTGGGGCTGGATCAGAACCGTCTGGCGATGTTGCTTGCGGTGCTGCACCGCCACGGCGGGAT
TCCGACCCACGATCAGGACGTGTTCCTCAACGTGGTCGGTGGCGTGAAGGTGCTGGAGACAGCGTCGGATTTGGCGTTGA
TGGCGGCGGTGATGTCGAGTTTGCGCAATCGGCCGTTACCGCATGATCTGCTGGTGTTCGGCGAAGTCGGCCTGTCTGGC
GAAGTGCGCCCGGTGCCGAGCGGGCAGGAGCGGCTGAAAGAAGCGGCCAAGCACGGTTTCAAACGCGCCATCGTGCCGAA
GGGTAATGCTCCGAAGGAATCGCCTCCCGGCTTGCAGATCATCGCCGTGACGCGTCTGGAACAGGCCCTCGACGCACTCT
TCGAGTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(81-221)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J2YZH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.453

100

0.497
  radA Streptococcus mitis SK321

46.491

100

0.466
  radA Streptococcus mitis NCTC 12261

46.272

100

0.464
  radA Streptococcus pneumoniae Rx1

46.272

100

0.464
  radA Streptococcus pneumoniae D39

46.272

100

0.464
  radA Streptococcus pneumoniae R6

46.272

100

0.464
  radA Streptococcus pneumoniae TIGR4

46.272

100

0.464