Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   PCP24_RS23240 Genome accession   NZ_CP115273
Coordinates   5021275..5022768 (-) Length   497 a.a.
NCBI ID   WP_003094357.1    Uniprot ID   A0A0H2ZGR9
Organism   Pseudomonas aeruginosa strain F016     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5016275..5027768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP24_RS23205 (PCP24_23200) - 5017126..5017575 (+) 450 WP_003094369.1 hypothetical protein -
  PCP24_RS23210 (PCP24_23205) - 5017588..5018199 (+) 612 WP_003098862.1 superoxide dismutase -
  PCP24_RS23215 (PCP24_23210) - 5018218..5019150 (+) 933 WP_003120918.1 ZIP family metal transporter -
  PCP24_RS23220 (PCP24_23215) - 5019247..5019519 (-) 273 WP_003094362.1 HPr family phosphocarrier protein -
  PCP24_RS23225 (PCP24_23220) rapZ 5019549..5020409 (-) 861 WP_003094361.1 RNase adapter RapZ -
  PCP24_RS23230 (PCP24_23225) ptsN 5020411..5020875 (-) 465 WP_003098853.1 PTS IIA-like nitrogen regulatory protein PtsN -
  PCP24_RS23235 (PCP24_23230) hpf 5020889..5021197 (-) 309 WP_003094359.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  PCP24_RS23240 (PCP24_23235) rpoN/rpoN1 5021275..5022768 (-) 1494 WP_003094357.1 RNA polymerase factor sigma-54 Machinery gene
  PCP24_RS23245 (PCP24_23240) lptB 5022994..5023719 (-) 726 WP_003094355.1 LPS export ABC transporter ATP-binding protein -
  PCP24_RS23250 (PCP24_23245) lptA 5023719..5024246 (-) 528 WP_003120916.1 lipopolysaccharide transport periplasmic protein LptA -
  PCP24_RS23255 (PCP24_23250) lptC 5024233..5024805 (-) 573 WP_003094353.1 LPS export ABC transporter periplasmic protein LptC -
  PCP24_RS23260 (PCP24_23255) - 5024814..5025353 (-) 540 WP_003112742.1 KdsC family phosphatase -
  PCP24_RS23265 (PCP24_23260) kdsD 5025353..5026333 (-) 981 WP_003134758.1 arabinose-5-phosphate isomerase KdsD -
  PCP24_RS23270 (PCP24_23265) - 5026747..5027556 (+) 810 WP_003094343.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 56054.22 Da        Isoelectric Point: 4.4327

>NTDB_id=701005 PCP24_RS23240 WP_003094357.1 5021275..5022768(-) (rpoN/rpoN1) [Pseudomonas aeruginosa strain F016]
MKPSLVLKMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLERQEDGDDFDNSDPLADGAEQAASAPQESPLQE
SATPSVESLDDDQWSERIPSELPVDTAWEDIYQTSASSLPSNDDDEWDFTARTSSGESLHSHLLWQVNLAPMSDTDRMIA
VTIIDSINNDGYLEESLEEILAAIDPELDVELDEVEVVLRRIQQLEPAGIGARNLRECLLLQLRQLPSTTPWLNEALRLV
SDYLDLLGGRDYSQLMRRMKLKEDELRQVIELIQCLHPRPGSQIESSEAEYIVPDVIVRKDNERWLVELNQEAMPRLRVN
ATYAGMVRRADSSADNTFMRNQLQEARWFIKSLQSRNETLMKVATQIVEHQRGFLDYGEEAMKPLVLHDIAEAVGMHEST
ISRVTTQKYMHTPRGIFELKYFFSSHVSTAEGGECSSTAIRAIIKKLVAAENAKKPLSDSKIAGLLEAQGIQVARRTVAK
YRESLGIAPSSERKRLV

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=701005 PCP24_RS23240 WP_003094357.1 5021275..5022768(-) (rpoN/rpoN1) [Pseudomonas aeruginosa strain F016]
ATGAAACCATCGCTAGTCCTCAAGATGGGCCAGCAGCTGACGATGACGCCGCAGCTGCAACAGGCCATACGCCTCCTCCA
GCTATCCACCCTGGACCTCCAGCAGGAAATCCAGGAAGCGCTGGAATCCAATCCCATGCTCGAACGCCAGGAAGACGGCG
ACGATTTCGACAACAGCGACCCTCTCGCCGATGGCGCCGAACAGGCGGCCAGCGCGCCCCAGGAGAGCCCCCTCCAGGAA
AGCGCCACGCCCAGCGTCGAAAGCCTCGACGACGACCAGTGGAGCGAACGCATACCCAGCGAGTTGCCGGTGGATACCGC
CTGGGAAGACATCTACCAGACCAGCGCCAGCAGCCTGCCCAGCAACGACGATGACGAGTGGGACTTCACCGCGCGCACCA
GCAGCGGCGAGAGCCTGCACAGCCACCTGCTCTGGCAGGTCAACCTGGCACCGATGTCGGACACCGATCGGATGATCGCG
GTGACCATCATCGATAGCATCAACAACGATGGCTACCTCGAAGAGTCCCTCGAAGAAATCCTCGCCGCCATCGATCCGGA
ACTGGACGTCGAGCTCGACGAAGTGGAAGTCGTGCTGCGCCGCATCCAGCAACTGGAACCCGCCGGCATCGGCGCCCGCA
ACCTGCGCGAGTGCCTGCTGCTGCAACTGCGCCAGTTGCCGTCCACCACGCCCTGGCTGAACGAAGCGCTGCGCCTGGTA
TCCGACTACCTCGACCTGCTCGGCGGCCGCGACTACAGCCAATTGATGCGGCGCATGAAGCTCAAGGAAGACGAACTGCG
CCAGGTCATCGAGCTGATCCAGTGCCTGCATCCCCGGCCCGGTTCGCAGATCGAATCGAGCGAAGCCGAATACATCGTCC
CCGACGTCATCGTGCGCAAGGACAACGAGCGCTGGCTGGTCGAGCTGAACCAGGAGGCGATGCCACGCCTGCGCGTCAAC
GCCACCTACGCCGGCATGGTCCGCCGCGCCGACAGCAGCGCCGACAATACCTTCATGCGCAACCAGTTGCAGGAAGCCCG
CTGGTTCATCAAGAGCCTGCAGAGCCGCAACGAAACGCTGATGAAGGTCGCCACCCAGATCGTCGAGCACCAGCGCGGTT
TCCTCGACTACGGCGAAGAAGCCATGAAGCCGCTGGTCCTGCACGACATCGCCGAAGCGGTGGGCATGCACGAATCGACC
ATTTCGCGGGTCACCACGCAGAAATACATGCATACGCCGCGCGGCATTTTCGAGCTGAAATATTTCTTTTCAAGTCACGT
CAGTACCGCCGAAGGCGGGGAATGCTCGTCCACCGCGATCCGCGCGATCATCAAGAAACTGGTGGCCGCGGAAAATGCGA
AAAAGCCATTGAGCGACAGCAAGATCGCTGGTTTACTGGAGGCACAGGGCATTCAAGTGGCTCGCCGCACCGTCGCCAAA
TACCGCGAATCCCTGGGCATAGCCCCTTCGAGCGAGCGCAAGCGACTGGTGTGA

Domains

Predicted by InterProScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(337-495)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(129-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

46.654

100

0.477