Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | NF677_RS22455 | Genome accession | NZ_CP099599 |
| Coordinates | 5032837..5033709 (+) | Length | 290 a.a. |
| NCBI ID | WP_252884848.1 | Uniprot ID | - |
| Organism | Pseudomonas siliginis strain OTU6ESPEB1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5027837..5038709
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NF677_RS22430 (NF677_22430) | - | 5028053..5028352 (+) | 300 | WP_150742242.1 | DUF2845 domain-containing protein | - |
| NF677_RS22435 (NF677_22435) | - | 5028617..5028970 (-) | 354 | WP_252884846.1 | BON domain-containing protein | - |
| NF677_RS22440 (NF677_22440) | pilA/pilAI | 5029266..5029688 (-) | 423 | WP_041477820.1 | pilin | Machinery gene |
| NF677_RS22445 (NF677_22445) | pilB | 5029915..5031615 (+) | 1701 | WP_056790439.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| NF677_RS22450 (NF677_22450) | pilC | 5031618..5032835 (+) | 1218 | WP_252884847.1 | type II secretion system F family protein | Machinery gene |
| NF677_RS22455 (NF677_22455) | pilD | 5032837..5033709 (+) | 873 | WP_252884848.1 | A24 family peptidase | Machinery gene |
| NF677_RS22460 (NF677_22460) | coaE | 5033706..5034329 (+) | 624 | WP_252884849.1 | dephospho-CoA kinase | - |
| NF677_RS22465 (NF677_22465) | yacG | 5034326..5034526 (+) | 201 | WP_016773149.1 | DNA gyrase inhibitor YacG | - |
| NF677_RS22470 (NF677_22470) | - | 5034534..5034749 (-) | 216 | WP_016773148.1 | hypothetical protein | - |
| NF677_RS22475 (NF677_22475) | - | 5034815..5035504 (-) | 690 | WP_041477814.1 | energy-coupling factor ABC transporter permease | - |
| NF677_RS22480 (NF677_22480) | - | 5035695..5036321 (+) | 627 | WP_007909887.1 | DUF1780 domain-containing protein | - |
| NF677_RS22485 (NF677_22485) | - | 5036318..5036845 (+) | 528 | WP_252882699.1 | MOSC domain-containing protein | - |
| NF677_RS22490 (NF677_22490) | - | 5036897..5037070 (+) | 174 | WP_007909875.1 | DUF3094 domain-containing protein | - |
| NF677_RS22495 (NF677_22495) | - | 5037134..5038432 (+) | 1299 | WP_252873381.1 | NAD(P)/FAD-dependent oxidoreductase | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 31907.13 Da Isoelectric Point: 7.6859
>NTDB_id=700935 NF677_RS22455 WP_252884848.1 5032837..5033709(+) (pilD) [Pseudomonas siliginis strain OTU6ESPEB1]
MPIDELFAVYPLAFVVSALLLGLVVGSFLNVVVWRLPKMLERDWRQQAHDVLGLPTETPVPTYNLMLPHSACPHCGHRIR
PWENIPLLSYLWLRGRCSGCSAPISKRYPLTELACGVLSAFIAWHLGFGWPAGLLILLTWGLLAMSLIDCEHQLLPDVLV
LPLLWLGLIVNSFGVFVALPDALWGAVAGYLALWSVFWLFKLLTGKDGIGHGDFKLLALLGAWGGWQILPLTILLSSLVG
AILGVVMLRLRAQATSTPIPFGPFLAIAGWIALLWGGQITDFYWQSVGLK
MPIDELFAVYPLAFVVSALLLGLVVGSFLNVVVWRLPKMLERDWRQQAHDVLGLPTETPVPTYNLMLPHSACPHCGHRIR
PWENIPLLSYLWLRGRCSGCSAPISKRYPLTELACGVLSAFIAWHLGFGWPAGLLILLTWGLLAMSLIDCEHQLLPDVLV
LPLLWLGLIVNSFGVFVALPDALWGAVAGYLALWSVFWLFKLLTGKDGIGHGDFKLLALLGAWGGWQILPLTILLSSLVG
AILGVVMLRLRAQATSTPIPFGPFLAIAGWIALLWGGQITDFYWQSVGLK
Nucleotide
Download Length: 873 bp
>NTDB_id=700935 NF677_RS22455 WP_252884848.1 5032837..5033709(+) (pilD) [Pseudomonas siliginis strain OTU6ESPEB1]
ATGCCTATCGACGAACTGTTTGCCGTGTATCCGCTGGCCTTTGTGGTCAGCGCGCTGCTGCTCGGGCTGGTGGTCGGCAG
CTTCCTCAACGTAGTGGTCTGGCGCCTGCCGAAGATGCTCGAGCGCGACTGGCGCCAGCAGGCCCATGATGTGCTCGGCC
TGCCCACTGAAACGCCTGTGCCGACCTACAACCTGATGCTGCCGCACTCCGCGTGCCCGCATTGCGGACACCGGATCCGC
CCTTGGGAAAACATTCCGCTGCTCAGTTATCTGTGGCTGCGCGGGCGATGCTCAGGCTGCTCGGCGCCGATCAGCAAACG
TTACCCGCTGACCGAACTGGCCTGCGGCGTCCTCTCGGCATTCATTGCCTGGCATCTCGGCTTCGGTTGGCCGGCAGGTC
TGCTGATCTTGCTGACATGGGGCTTGCTGGCGATGAGTCTGATCGACTGCGAACATCAGCTGCTGCCCGATGTGCTGGTG
CTGCCGCTGCTGTGGCTGGGGCTGATCGTCAACAGCTTCGGCGTGTTCGTGGCGTTGCCCGATGCGTTGTGGGGCGCGGT
CGCGGGTTATCTGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAACTGCTCACCGGCAAGGACGGCATCGGTCATGGCGATT
TCAAGCTGTTGGCCTTGCTTGGCGCTTGGGGTGGCTGGCAGATTCTGCCGCTGACAATTCTGTTGTCATCCTTGGTGGGA
GCGATTTTGGGCGTCGTCATGCTGCGTCTGCGCGCCCAGGCAACCTCGACGCCGATCCCCTTCGGACCCTTTCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTCTGTCGGTTTGAAATGA
ATGCCTATCGACGAACTGTTTGCCGTGTATCCGCTGGCCTTTGTGGTCAGCGCGCTGCTGCTCGGGCTGGTGGTCGGCAG
CTTCCTCAACGTAGTGGTCTGGCGCCTGCCGAAGATGCTCGAGCGCGACTGGCGCCAGCAGGCCCATGATGTGCTCGGCC
TGCCCACTGAAACGCCTGTGCCGACCTACAACCTGATGCTGCCGCACTCCGCGTGCCCGCATTGCGGACACCGGATCCGC
CCTTGGGAAAACATTCCGCTGCTCAGTTATCTGTGGCTGCGCGGGCGATGCTCAGGCTGCTCGGCGCCGATCAGCAAACG
TTACCCGCTGACCGAACTGGCCTGCGGCGTCCTCTCGGCATTCATTGCCTGGCATCTCGGCTTCGGTTGGCCGGCAGGTC
TGCTGATCTTGCTGACATGGGGCTTGCTGGCGATGAGTCTGATCGACTGCGAACATCAGCTGCTGCCCGATGTGCTGGTG
CTGCCGCTGCTGTGGCTGGGGCTGATCGTCAACAGCTTCGGCGTGTTCGTGGCGTTGCCCGATGCGTTGTGGGGCGCGGT
CGCGGGTTATCTGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAACTGCTCACCGGCAAGGACGGCATCGGTCATGGCGATT
TCAAGCTGTTGGCCTTGCTTGGCGCTTGGGGTGGCTGGCAGATTCTGCCGCTGACAATTCTGTTGTCATCCTTGGTGGGA
GCGATTTTGGGCGTCGTCATGCTGCGTCTGCGCGCCCAGGCAACCTCGACGCCGATCCCCTTCGGACCCTTTCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTCTGTCGGTTTGAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
53.873 |
97.931 |
0.528 |
| pilD | Vibrio campbellii strain DS40M4 |
52.632 |
98.276 |
0.517 |
| pilD | Neisseria gonorrhoeae MS11 |
46.69 |
98.966 |
0.462 |
| pilD | Acinetobacter baumannii D1279779 |
46.715 |
94.483 |
0.441 |
| pilD | Acinetobacter nosocomialis M2 |
46.715 |
94.483 |
0.441 |